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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTCAGAGTTCTTGACAAGGAGAGGCGTCAATGTCATTGTGCTGATGTTGGTTCTCACTCGATTCAGCGTTTAAGATCTATGATGCAAGTACATGACAgtatggttatcttgaatcttatatcccagaaatattcatgttttcattttgtgatatatttttattttacgatacatttgccttttcttaggtatctatatgatgcttcattatagagagcatacatttgccacaatttgttgattatttttatatatttggccag

Basic information

species Glycine max
transcript GLYMA18G02440.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02440.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0031g01330.t01 (Vitis vinifera), 5'ss of exon 6
GTGCTCAGAGTTCTTGACAAGGAGAGGCGTCAATGTCATTGTGCTGATGTTGGTTCTCACTCGATTCAGCGTTTAAGATCTATGATGCAAGTACATGACAgtatggttatcttgaatcttatatcccagaaatattcatgttttcattttgtgatatatttttattttacgatacatttgccttttcttaggtatctatatgatgcttcattatagagagcatacatttgccacaatttgttgattatttttatatatttggccag
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GTGCTCAGAGTTCTGGACAAGGAGAAGCGTCAAGAGCATTGTGCTGATGTTGGTTCACACTTGATTGAACGTTTGAGAGCTCTTCAGCAGAAACATGACAgtaagtttctcttgaactagtgatccccgaagaa-----atttccatttt----------cccctttctggattcttgtccttagttttaagttttta-gtatcgactggttacag--------------------------------------------------