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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAATCTCTCGGCTCCACAAACCTTCCGCTCCAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGgtgaacatcccgaccatgttgttgttattaaggtatatttgtttcacccatttttcactatttctttctcttgtcag

Basic information

species Glycine max
transcript GLYMA18G02210.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 7
ATGAATCTCTCGGCTCCACAAACCTTCCGCTCCAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGgtgaacatcccgaccatgttgttgttattaaggt--atatttgtttcacccatttttcactatttctttctcttgtcag----------------------------------------------
                                |||||| |||||||||||||| || || || || ||||||   |||||||||||||||||||||| ||| || ||||| || ||||||||||| || |||||    | ||  | ||   ||| |||   |    | |  | |   |                                               
--------------------------------CAAGGAGATCTCCAAGAGCAATGTGGTCGATGACATGGTCTCAAGCAATGCCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattcttctgcag

upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os10g22450.1 (Oryza sativa), 5'ss of exon 7
ATGAATCTCTCGGCTCCACAAACCTTCCGCTCCAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGgtgaacatcccgaccatgttgttgttattaaggtatatttgtttcacccatttttca-ctatttctttctcttgtcag---------------------------------------------------------
                                |||||| ||||||||||||  ||| || ||||| ||||||  |||||| ||||||||||| ||||| || || || |||||||| ||  | || || |||||      |     |||||| || | | | ||| ||||      ||                                                         
--------------------------------CAAGGAGATCTCCAAGAGCGGCGTCGTCGACGACATGGTCTCCAGCAACGCCATCCTCTACGAGCCCGGCGAGCACCCCGACCACGTCATCGTCATCAAGgtccgcccgcc---cccattcttgatccaattcattcttgcagtagtggcactcatcatgcatatggtgtggctgatgatttggttgctgtttctatggatta

upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G155242_T01 (Zea mays), 5'ss of exon 7
ATGAATCTCTCGGCTCCACAAACCTTCCGCTCCAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGgtgaacatcccgaccatgttgttgttattaaggtatatttgtttcacccatttttcactatttcttt-ctcttgtcag--------------------------------------
                                |||||| ||||||||||||||||| || || || ||||||   ||||||||||||||||||||||| || || |||||||| ||||| ||||| || ||||| | || | |   |       ||  ||    ||  |   ||  ||                                      
--------------------------------CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCGAGCAATGCCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagctgatctttcacctcgttaaaagttgacatatgcaaggcagatttacattgaaacttgtcactcttttgttgcag

upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G004528_T03 (Zea mays), 5'ss of exon 7
ATGAATCTCTCGGCTCCACAAACCTTCCGCTCCAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGgtgaacatcccgaccatgttgttgttattaaggtatatttgtt--tcacccatttttcactatttctttctcttgt--cag-------------------------------------------------
                                |||||| ||||||||||||||||| || || || ||||||   ||||||||||| ||||||| ||| || || |||||||| ||||||||||| || ||||| | || | |  ||  |||  | |    |   ||  | | ||   |||                                                 
--------------------------------CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagctgatcttccacctctttaaaaagctggcacgtgcagcagtttaaacgtagatttacattgaaacctgccactcctttgctgcatgcag

upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G145638_T02 (Zea mays), 5'ss of exon 3
ATGAATCTCTCGGCTCCACAAACCTTCCGCTCCAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGgtgaacatcccgaccatgttgttgttattaaggtatatttgtttcacccatttttcactatttctttctcttgt-cag----------------------------------------------------
                                |||||| ||||||||||||||||| || || || || |||   ||||||||||| ||||||| ||| || || |||||||| ||||||||||| || ||||| | || | |  ||       ||  ||      |  |   | |||                                                    
--------------------------------CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATTGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagctgaacttccacctctttaaaaagatggcacatgcagcagtttaaacgtagatttacattgaaacttgccactcatttgttgcatgcag

upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G010768_T01 (Zea mays), 5'ss of exon 1
ATGAATCTCTCGGCTCCACAAACCTTCCGCTCCAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGgtgaacatcccgaccatgttgttgttattaaggtatatttgtt--tcacccatttttcactatttctttctcttgtcag----------------------------------------------------
                                |||||| ||||||||||||||||| || || || ||||||   ||||||||||| ||||||| |||||| || |||||||| |  |||||||| || ||| | | || | |  ||  |||  | |    |   ||| |   || |||                                                    
--------------------------------CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCAAGCAATGCCATTCTCTATGGGCCTGGCGAGCATCCCGATCTCGTTGTTGTCATCAAGatttgttagctgatcttccacctctttaaaaagcttgcaggtg-cagtagtttaaacgtagatttacattgaaacttgccactcatttgttgcatgcag

upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G392513_T02 (Zea mays), 5'ss of exon 5
ATGAATCTCTCGGCTCCACAAACCTTCCGCTCCAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGgtgaacatcccgaccatgttgttgttattaaggtatatttgtt--tcacccatttttcactatttctttctcttgt--cag-------------------------------------------------
                                |||||| ||||||||||||||||| || || || ||||||   ||||||||||| ||||||| ||| |  || |||||||| |||||| |||| || ||||| |||| | |  ||  |||  | |    |   ||  | | ||   |||                                                 
--------------------------------CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCAAGCAATGCCATTCTCTATGGGCCCGACGAGCATCCCGATCATGTTATTGTCATCAAGgtctattagctaatcttccacctctttaaaaagctggcacatgcagcagtttaaacgtagatttacattaaaacttgccactcctttgctgcatgcag

upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 7
lower sequence: AT2G22240.1 (Arabidopsis thaliana), 5'ss of exon 5
ATGAATCTCTCGGCTCCACAAACCTTCCGCTCCAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGgtgaacatcccgaccatgttgttgttattaaggtata--tttgtttca-----cccatttttcactatttctttctcttgtcag-----------------------------------------------
                                 ||||| || || |||||||| ||||| ||||| |||||    || |||| |||||||| ||||||||||||||| || |||||||| ||||| || ||||| |   ||||  |||     |  | |  ||| |   || ||   || | ||                                               
--------------------------------TAAGGAGATTTCAAAGAGCAATGTTGTAGACGACATGGTAGCTAGTAATGGCATCCTCTTTGAGCCTGGTGAACACCCTGACCATGTCGTTGTCATCAAGgtttgattttgaatcagaggccagagtgatcaattcctcctttctttttaagtacattttaaagtcttaaatcctgctattgttctgaatgttttgcag

upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 7
lower sequence: AT4G39800.1 (Arabidopsis thaliana), 5'ss of exon 7
ATGAATCTCTCGGCTCCACAAACCTTCCGCTCCAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGgtgaacatcccgaccatgttgttgttattaaggtatatttgtttc--acccatttttcactatttctttctcttgtcag-----------------------------------------
                                 ||||| |||||||| ||||| || || |||||||||||    |||||||  ||||||| ||||||||| ||||| || |||||||||||||| || |||||| ||      |    |      |||  |  | ||||| ||| ||                                          
--------------------------------TAAGGAGATCTCCAAAAGCAATGTCGTGGACGATATGGTTGCTAGCAATGGTATCCTCTTTGAGCCTGGGGAACACCCGGACCATGTTGTTGTCATCAAGgtaaatagagaaccggacagacactcaaaacctgtttctgttggcaatctgagatcccattgatccaatttgtgtgtttgttttgtag

upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 7
ATGAATCTCTCGGCTCCACAAACCTTCCGCTCCAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGgtgaacatcccgaccatgttgttgttattaaggtatatttgtttcacccatttttcactatttctttctcttgtcag--------------------------------------------------------------
                                |||||| |||||||||||||| ||||| ||||| |||||   |||||| || ||||| ||||||||||| || || || |||||||| || || || |||||||||        ||   ||||   | | | | |  |   ||||                                                              
--------------------------------CAAGGAGATCTCCAAGAGCAATGTTGTCGACGACATGGTTGCCAGCAACGCTATCCTGTATGAGCCTGGGGAGCACCCTGACCATGTGGTGGTCATCAAGgtatatcgcagaaccctccttttgtttgtatgtattacaattcagatgctggtttggactcattcattctcactggctaacattatacggtgttgttgatattgcag

upper sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 7
lower sequence: EFJ37320 (Selaginella moellendorffii), 5'ss of exon 7
ATGAATCTCTCGGCTCCACAAACCTTCCGCTCCAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGgtgaacatcccgaccatgttgttgttattaaggtatatt---tgtttcacccatttttcacta------------tttctttctcttgtcag
                                ||||||||||||||||||||| || |||||||| |||||    |||||||||||| | |   |||| ||||||||||| || |||||  | || || |||||| |      | || |    ||| |    |            || |||||  ||   ||
--------------------------------CAAGGAAATCTCCAAGAGCAATGTGGTTGACGACATGGTTTCTAGCAATGCCATCTTGTTCAAGCCCGGTGAACATCCTGATCATGTGATCGTCATCAAGgtaaaacaaacgcttgatttttttctagggaaaactcccgagtttgctttcgttttctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22931962|gb|BU549101.1|BU549101
EST:     CAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTG                         GTCTTTGATTCTATCTGCTTTGTTGCCTTTGCAGTATGTGCCTTACGTAGG
genomic: CAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGgtgaacatcc ... ctcttgtcagGTCTTTGATTCTATCTGCTTTGTTGCCTTTGCAGTATGTGCCTTACGTAGG