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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgtttcacccatttttcactatttctttctcttgtcaggtctttgattctatctgctttgttgcctttgcag

Basic information

species Glycine max
transcript GLYMA18G02210.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02210.4 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 7
CAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtat--atttgtttcacccatttttcactatttctttctctt---------gtcaggtctttgattctatctgctttgt---tgcctttgcag
|||||| |||||||||||||| || || || || ||||||   |||||||||||||||||||||| ||| || ||||| || ||||||||||| || ||||| |  | ||  | ||   ||| |||   |    | |  | |              || || ||||  | ||  |   |   | | | |||||
CAAGGAGATCTCCAAGAGCAATGTGGTCGATGACATGGTCTCAAGCAATGCCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattcttctgcag

upper sequence: GLYMA18G02210.4 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os10g22450.1 (Oryza sativa), 5'ss of exon 7
CAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgtttcacccatttttca-ctatttctttctcttgtcag-gtctttgattctatctgctttgttgcctttgcag----------------------
|||||| ||||||||||||  ||| || ||||| ||||||  |||||| ||||||||||| ||||| || || || |||||||| ||  | || || |||||      |     |||||| || | | | ||| ||||      || | |  | ||  |   |    ||| ||   ||                         
CAAGGAGATCTCCAAGAGCGGCGTCGTCGACGACATGGTCTCCAGCAACGCCATCCTCTACGAGCCCGGCGAGCACCCCGACCACGTCATCGTCATCAAGgtccgcccgcc---cccattcttgatccaattcattcttgcagtagtggcactcatcatgcatatggtgtggctgatgatttggttgctgtttctatggatta

upper sequence: GLYMA18G02210.4 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G155242_T01 (Zea mays), 5'ss of exon 7
CAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgtt--tcacccatttt-tcactattt--ctttctcttgtcaggtctttgattctatctgctttgttgcctttgcag
|||||| ||||||||||||||||| || || || ||||||   ||||||||||||||||||||||| || || |||||||| ||||| ||||| || ||||| | || | |  ||   ||  |  | |  | ||  | |   |  | ||| | |    |   |  ||      |    ||||||
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCGAGCAATGCCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagctgatctttcacctcgttaaaagttgacatatgcaaggcagatttacattgaaacttgtcactcttttgttgcag

upper sequence: GLYMA18G02210.4 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G004528_T03 (Zea mays), 5'ss of exon 7
CAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgtt--tcacccatttttcactatttctttctcttgtcaggtctttgat-tctatctgctttg----ttgcc-----tttgcag-------
|||||| ||||||||||||||||| || || || ||||||   ||||||||||| ||||||| ||| || || |||||||| ||||||||||| || ||||| | || | |  ||  |||  | |    |   ||  | | ||       ||  |  |  || | | |||     ||||     ||||| |       
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagctgatcttccacctctttaaaaagctggcacgtgcagcagtttaaacgtagatttacattgaaacctgccactcctttgctgcatgcag

upper sequence: GLYMA18G02210.4 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G145638_T02 (Zea mays), 5'ss of exon 3
CAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgtttcac--ccatttttcactatttctttctcttgtcaggtctttgat-tctatctgctttg----ttgcc-----tttgcag-------
|||||| ||||||||||||||||| || || || || |||   ||||||||||| ||||||| ||| || || |||||||| ||||||||||| || ||||| | || | |  ||  |||  | |    |    |  | | ||       ||  |  |  || | | |||    |||||     ||||  |       
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATTGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagctgaacttccacctctttaaaaagatggcacatgcagcagtttaaacgtagatttacattgaaacttgccactcatttgttgcatgcag

upper sequence: GLYMA18G02210.4 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G010768_T01 (Zea mays), 5'ss of exon 1
CAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgtt--tcacccatttttcactatttctttctcttgtcaggtctttgat-tctatctgctttg----ttgcc-----tttgcag-------
|||||| ||||||||||||||||| || || || ||||||   ||||||||||| ||||||| |||||| || |||||||| |  |||||||| || ||| | | || | |  ||  |||  | |    |   ||| |   ||       ||  |  |  || | | |||    |||||     ||||  |       
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCAAGCAATGCCATTCTCTATGGGCCTGGCGAGCATCCCGATCTCGTTGTTGTCATCAAGatttgttagctgatcttccacctctttaaaaagcttgcaggtgcagtagtttaaacgtagatttacattgaaacttgccactcatttgttgcatgcag

upper sequence: GLYMA18G02210.4 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G392513_T02 (Zea mays), 5'ss of exon 5
CAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgtt--tcacccatttttcactatttctttctcttgtcaggtctttgat-tctatctgctttg----ttgcc-----tttgcag-------
|||||| ||||||||||||||||| || || || ||||||   ||||||||||| ||||||| ||| |  || |||||||| |||||| |||| || ||||| |||| | |  ||  |||  | |    |   ||  | | ||       ||  |  |  || | | ||     |||||     ||||| |       
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCAAGCAATGCCATTCTCTATGGGCCCGACGAGCATCCCGATCATGTTATTGTCATCAAGgtctattagctaatcttccacctctttaaaaagctggcacatgcagcagtttaaacgtagatttacattaaaacttgccactcctttgctgcatgcag

upper sequence: GLYMA18G02210.4 (Glycine max), 5'ss of exon 7
lower sequence: AT2G22240.1 (Arabidopsis thaliana), 5'ss of exon 5
CAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtata--tttgtttca-------------cccatttttcactatttctt---tctcttgtcaggtctttgattctatc--tgctttgttgcctttgcag
 ||||| || || |||||||| ||||| ||||| |||||    || |||| |||||||| ||||||||||||||| || |||||||| ||||| || ||||| |   ||||  |||              | |||  ||  |  || ||   |   || | | |||||  || ||     || | ||     |||||||
TAAGGAGATTTCAAAGAGCAATGTTGTAGACGACATGGTAGCTAGTAATGGCATCCTCTTTGAGCCTGGTGAACACCCTGACCATGTCGTTGTCATCAAGgtttgattttgaatcagaggccagagtgatcaattcctcctttctttttaagtacattttaaagtcttaaatcctgctattgttctgaatgttttgcag

upper sequence: GLYMA18G02210.4 (Glycine max), 5'ss of exon 7
lower sequence: AT4G39800.1 (Arabidopsis thaliana), 5'ss of exon 7
CAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgtttc--acccatttttcactatttctttctcttgtca------ggtct--ttgattctatctgctttgttgcctttgcag
 ||||| |||||||| ||||| || || |||||||||||    |||||||  ||||||| ||||||||| ||||| || |||||||||||||| || |||||| ||      |    |      |||  |  | ||||| ||| ||      | ||   ||||| | || || | ||||   |||| ||
TAAGGAGATCTCCAAAAGCAATGTCGTGGACGATATGGTTGCTAGCAATGGTATCCTCTTTGAGCCTGGGGAACACCCGGACCATGTTGTTGTCATCAAGgtaaatagagaaccggacagacactcaaaacctgtttctgttggcaatctgagatcccattgatccaatttg-tgtgtttgttttgtag

upper sequence: GLYMA18G02210.4 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 7
CAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgtttcacccatttttcactatttctttctcttgtcaggtctttgattctatctgctttgttgcctttgcag----------------------------
|||||| |||||||||||||| ||||| ||||| |||||   |||||| || ||||| ||||||||||| || || || |||||||| || || || |||||||||        ||   ||||   | | | | |  |   |||| |  | | ||  |     |   |  |  | ||                              
CAAGGAGATCTCCAAGAGCAATGTTGTCGACGACATGGTTGCCAGCAACGCTATCCTGTATGAGCCTGGGGAGCACCCTGACCATGTGGTGGTCATCAAGgtatatcgcagaaccctccttttgtttgtatgtattacaattcagatgctggtttggactcattcattctcactggctaacattatacggtgttgttgatattgcag

upper sequence: GLYMA18G02210.4 (Glycine max), 5'ss of exon 7
lower sequence: EFJ37320 (Selaginella moellendorffii), 5'ss of exon 7
CAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgtttcacccatttttcactatttctttctcttgtcaggtctttgattctatctgctttgttgcctttgcag
||||||||||||||||||||| || |||||||| |||||    |||||||||||| | |   |||| ||||||||||| || |||||  | || || |||||| |       |    ||||||  |||       |||  |  ||   |||| ||   | | ||               
CAAGGAAATCTCCAAGAGCAATGTGGTTGACGACATGGTTTCTAGCAATGCCATCTTGTTCAAGCCCGGTGAACATCCTGATCATGTGATCGTCATCAAGgtaaaacaaacgc-ttgatttttttctagggaaaactcccg--ag---tttgctttcgttttctag-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8670237|gb|BE191344.1|BE191344
EST:     CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAG                         TATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
genomic: CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgt ... gcctttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
EST: gi|192304598|gb|FG994918.1|FG994918
EST:     CCATCCTCTATGAGCCTGGTGAACATCCAGACCATGTTGTTGTTATTAAG                         TATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
genomic: CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgt ... gcctttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
EST: gi|19453629|gb|BM955039.1|BM955039
EST:     CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAG                         TATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
genomic: CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgt ... gcctttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
EST: gi|120491712|gb|EH219879.1|EH219879
EST:     CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAG                         TATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
genomic: CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgt ... gcctttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
EST: gi|208071333|gb|GD872192.1|GD872192
EST:     CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAG                         TATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
genomic: CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgt ... gcctttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
EST: gi|11688361|gb|BF596037.1|BF596037
EST:     CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAG                         TATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
genomic: CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgt ... gcctttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
EST: gi|12774084|gb|BG239011.1|BG239011
EST:     CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAG                         TATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
genomic: CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgt ... gcctttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
EST: gi|16996086|gb|BM085458.1|BM085458
EST:     CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAG                         TATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
genomic: CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgt ... gcctttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
EST: gi|13788721|gb|BG651312.1|BG651312
EST:     CCATCCTCTATGAGCCTGGTGAACATCCAGACCATGTTGTTGTTATTAAG                         TATGTGCCTTACGTAGGGGACAGCAAGAGAGCCATGGATGAGTACACTTCA
genomic: CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgt ... gcctttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
EST: gi|16342506|gb|BI968101.1|BI968101
EST:     CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAG                         TATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
genomic: CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgt ... gcctttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
EST: gi|209697827|gb|BW670083.1|BW670083
EST:     GACCATGTTGTTGTTATTAAG                         TATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
genomic: GACCATGTTGTTGTTATTAAGgtatatttgt ... gcctttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
EST: gi|120530085|gb|EH258219.1|EH258219
EST:     CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAG                         TATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
genomic: CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgt ... gcctttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
EST: gi|120491684|gb|EH219851.1|EH219851
EST:     CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAG                         TATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
genomic: CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgt ... gcctttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
EST: gi|58017143|gb|CX703885.1|CX703885
EST:     CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAG                         TATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
genomic: CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgt ... gcctttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
EST: gi|19937572|gb|BQ081344.1|BQ081344
EST:     CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAG                         TATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
genomic: CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgt ... gcctttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
EST: gi|120491615|gb|EH219782.1|EH219782
EST:     CCATCCTCTATGAGCCTGGGGAACATCCCGACCATGATGGTGTTATTAAG                         TATGTGCCTTACGTAAGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
genomic: CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgt ... gcctttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
EST: gi|18724004|gb|BM523521.1|BM523521
EST:     CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAG                         TATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
genomic: CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgt ... gcctttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
EST: gi|298179536|gb|HO028007.1|HO028007
EST:     CCATCCTCTATGAGCCTGGTGAACATCCAGACCATGTTGTTGTTATTAAG                         TATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
genomic: CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgt ... gcctttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
EST: gi|13790045|gb|BG652636.1|BG652636
EST:     CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAG                         TATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA
genomic: CCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgt ... gcctttgcagTATGTGCCTTACGTAGGGGATAGCAAGAGAGCCATGGATGAGTACACTTCA