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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTGACTCAAGGTTGAGACCAGATCAAAGACATTTAGAAAATGGAGAATATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTGgtaaattacccacaactctcaacttttgatccatggtatctagagtttattggaatatgctatacgccaagcttttcttattgttgtaacttatgcttgattcataataattcag

Basic information

species Glycine max
transcript GLYMA18G01590.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G01590.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os12g18770.1 (Oryza sativa), 5'ss of exon 7
AACTGACTCAAGGTTGAGACCAGATCAAAGACATTTAGAAAATGGAGAATATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTGgtaaattacccacaactctcaacttttgatccatg-gtatctagagtttattggaatatgctatacgccaagcttttcttattgttgtaacttatgcttgattcataataattcag
 ||||| ||  |  |||| || |||||||| ||| | |||||||| ||||||||| |||| |||||||||||||| || ||||||||  ||||| ||| ||||         ||||  |     |||||| |||  || | || |  || || |  | || |    |||| |   |  ||  |     |  | |    |||     | |||     
TACTGATTCTCGTCTGAGGCCTGATCAAAGGCATCTTGAAAATGGTGAATATGAGATGGCTAATGCAGAGAAACTTAGGCTTGAACAACTGCAGCGACAGgta------ttccaacctttgg--tttgattcatttgtgtttatatgttttttgcttctgtt---tgccatggcatattttcttggacatatgaaaggtgaaaggcattaa-----

upper sequence: GLYMA18G01590.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G156608_T03 (Zea mays), 5'ss of exon 2
AACTGACTCAAGGTTGAGACCAGATCAAAGACATTTAGAAAATGGAGAATATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTGgtaa------attacccacaactc----tcaacttttgatccatggtatctagagtttattggaatatgctatacgccaagcttttcttattgttgtaacttatgcttgattcataataattcag
 ||||| ||  | ||||||||||| ||||| ||| | |||||||| ||||||||| |||||||| |||||||||| || ||||||||  ||||  | | |||||      ||||   |  | |     |   ||||||     ||   |  | || ||||  |   ||| || ||      | | ||||  |  | |   ||||                     
TACTGATTCTCGTTTGAGACCAGACCAAAGGCATCTGGAAAATGGTGAATATGAGATGGCAAATTCAGAGAAACTTAGGCTTGAACAACTGCAACGGCAGgtaaccaacaattatatatgatttgacatggccttttgtcttgtgtctttcataggttatcaggcaatgata-acaattgacatgtcttgataatat---ttat---------------------

upper sequence: GLYMA18G01590.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G13170.1 (Arabidopsis thaliana), 5'ss of exon 7
AACTGACTCAAGGTTGAGACCAGATCAAAGACATTTAGAAAATGGAGAATATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTGgtaaattacccacaactctcaacttttgatccatggtatctagagtttattggaatatgctatacgccaagcttttcttattgttgtaacttatgcttgattcataataattcag
||| || |||||  |||||||||| |||||||| |||||||| || |||||||||   |||||||| |||||||| |||||||||||||| ||||||| |||| |  | | | |      |  | || |||     ||| || |  | ||||       | | | | |    | |    |    |||  | | ||  || | ||           
AACAGATTCAAGACTGAGACCAGACCAAAGACACTTAGAAAACGGTGAATATGAGTCAGCAAATGCCGAGAAACTGAGACTTGAACAGTTACAGAGACAGgtacaaaatctataggaga-atatgttaatcttgactatataca--taattgtgcatgaccacaggactgaatatag--aagagtgtgccgtttgtgtgttgcag----------

upper sequence: GLYMA18G01590.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0137g00290.t01 (Vitis vinifera), 5'ss of exon 7
AACTGACTCAAGGTTGAGACCAGATCAAAGACATTTAGAAAATGGAGAATATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTGgtaaattacccacaactctcaacttttgatccatggtatctagagtttattggaatatgctatacgccaagcttttcttattgttgtaacttatgcttgattcataa-taattcag
 |||||||||||| || | |||||||| || ||||| || |||||||||||||||||||||||||| ||||| || ||||| ||||| |||||||||| ||||  | ||  |     |||   |||   |   | |             || |    || | ||    ||  ||||| |||      || || || ||| |  ||||   | ||| 
TACTGACTCAAGGCTGCGGCCAGATCAGAGGCATTTGGAGAATGGAGAATATGAGCTGGCAAATGCGGAGAAGCTCAGACTCGAACACTTGCAGAGACAGgtatctcacttagtctcctctgttttcatttgttag------------gtttggccgtgttctagtttaaatttttcctatcac---aagttgtgattgttggataaactaatca-

upper sequence: GLYMA18G01590.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S40_145V6.1 (Physcomitrella patens), 5'ss of exon 9
AACTGACTCAAGGTTGAGACCAGATCAAAGACATTTAGAAAATGGAGAATATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTGgtaaattacccacaactctcaactttt--gatccatggtatctagagtttattggaatatgc----tatacgc-caagcttttctta-ttgttgta-acttatgcttgattcataataattcag-----------------------------------------
 || || |||||||||||||| |||||||||||| |||| ||||| ||||||||    || ||| |||| |||||  ||||||||||   |||| ||| |||   |  |  |     ||   |||||       || | || |   | | || |   ||||     ||   || | ||| ||          || | |  ||| |    | ||| |||||  |                                          
TACAGATTCAAGGTTGAGACCTGATCAAAGACATCTAGAGAATGGCGAATATGATGCTGCCAATTCAGAAAAACTGCGACTTGAACAAAAGCAGCGACGGgtgggtgtcataatgtccttgccttttccagagaattgcatgttatgctgatggagctatgtagattacgtgcacgagcattgaagggccagtgcacatgtatacggtttgcattataatctaaggaaactatttagaaactgatttaagagttggatggaccag

upper sequence: GLYMA18G01590.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S67_260V6.1 (Physcomitrella patens), 5'ss of exon 9
AACTGACTCAAGGTTGAGACCAGATCAAAGACATTTAGAAAATGGAGAATATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTGgtaaat--tacccacaact--ctcaacttttgatccatggtatcta---gagtttattggaa----tatgcta---tacgc-caagcttttcttattgttgtaacttatg---cttgattcataa--taattcag-----------------
 || || |||||||||||||| |||||||||||| | || ||||| ||||||||    || ||| |||| |||||  ||||||||||   |||| |||  || | |  |||   || ||  |||    ||   ||   | | ||||   | ||  | |   |    | ||| |   ||      | || |  |   | |  | | || ||   ||| ||||  |   | |||                    
TACAGATTCAAGGTTGAGACCTGATCAAAGACATCTGGAGAATGGTGAATATGATGCTGCCAATTCAGAAAAACTGCGACTTGAACAAAAGCAGCGACGAgtgagtcttactaccatcttgctcttgcttatgtcagagttctctacttgcgtaaactaacacttttgtgccagcgtaaatgtgaactctcttcgatttgatgatttttgtaactttattcggagactgatttgaaaggctgggtgaaccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193675874|gb|FK620028.1|FK620028
EST:     ATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTG                         GCAAGAAAGATGCAAGAAAGAGGATGGCAACCAAGATGGTTTAAGAAGGA
genomic: ATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTGgtaaattacc ... aataattcagGCAAGAAAGATGCAAGAAAGAGGATGGCAACCAAGATGGTTTAAGAAGGA
EST: gi|207840404|gb|GD812165.1|GD812165
EST:     ATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTG                         GCAAGAAAGATGCAAGAAAGAGGATGGCAACCAAGATGGTTTAAGAAGGAT
genomic: ATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTGgtaaattacc ... aataattcagGCAAGAAAGATGCAAGAAAGAGGATGGCAACCAAGATGGTTTAAGAAGGAT
EST: gi|193473724|gb|FK441485.1|FK441485
EST:     ATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTG                         GCAAGAAAGATGCAAGAAAGAGGATGGCAACCAAGATGGTTTAAGAAGGAT
genomic: ATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTGgtaaattacc ... aataattcagGCAAGAAAGATGCAAGAAAGAGGATGGCAACCAAGATGGTTTAAGAAGGAT
EST: gi|23729543|gb|BU762863.1|BU762863
EST:     ATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAG                         GCAAGAAAGATGCAAGAA
genomic: ATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTGgtaaattacc ... aataattcagGCAAGAAAGATGCAAGAA
EST: gi|208106764|gb|GD902325.1|GD902325
EST:     ATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTG                         GCAAGAAAGATGCAAGAAAGAGGATGGCAACCAAGATGGTTTAAGAAGGAT
genomic: ATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTGgtaaattacc ... aataattcagGCAAGAAAGATGCAAGAAAGAGGATGGCAACCAAGATGGTTTAAGAAGGAT
EST: gi|209724148|gb|BW659682.1|BW659682
EST:     ATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTG                         GCAAGAAAGATGCAAGAAAGAGGATGGCAACCAAGATGGTTTAAGAAGGAT
genomic: ATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTGgtaaattacc ... aataattcagGCAAGAAAGATGCAAGAAAGAGGATGGCAACCAAGATGGTTTAAGAAGGAT
EST: gi|208232008|gb|GE032769.1|GE032769
EST:     ATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTG                         GCAAGAAAGATGCAAGAAAGAGGATGGCAACCAAGATGGTTTAAGAAGGAT
genomic: ATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTGgtaaattacc ... aataattcagGCAAGAAAGATGCAAGAAAGAGGATGGCAACCAAGATGGTTTAAGAAGGAT
EST: gi|58015839|gb|CX702581.1|CX702581
EST:     ATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTG                         GCAAGAAAGATGCAAGAAAGAGGATGGCAACCAAGATGGTTTAAGAAGGAT
genomic: ATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTGgtaaattacc ... aataattcagGCAAGAAAGATGCAAGAAAGAGGATGGCAACCAAGATGGTTTAAGAAGGAT
EST: gi|14205607|gb|BG839285.1|BG839285
EST:     ATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTG                         GCAAGAAAGATGCAAGAAAGAGGATGGCAACCAAGATGGTTTAAGAAGGAT
genomic: ATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTGgtaaattacc ... aataattcagGCAAGAAAGATGCAAGAAAGAGGATGGCAACCAAGATGGTTTAAGAAGGAT
EST: gi|19268832|gb|BM885088.1|BM885088
EST:     ATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTG                         GCAAGAAAGATGCAAGAAAGAGGATGGCAACCAAGATGGTTTAAGAAGGAT
genomic: ATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTGgtaaattacc ... aataattcagGCAAGAAAGATGCAAGAAAGAGGATGGCAACCAAGATGGTTTAAGAAGGAT
EST: gi|58016257|gb|CX702999.1|CX702999
EST:     ATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTG                         GCAAGAAAGATGCAAGAAAGAGGATGGCAACCAAGATGGTTTAAGAAGGAT
genomic: ATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACTGgtaaattacc ... aataattcagGCAAGAAAGATGCAAGAAAGAGGATGGCAACCAAGATGGTTTAAGAAGGAT