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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGgtctgctgcctttatttctattgtgcatattgtgattaaattttttatgatggaaaaaaaattccatttactgtctaactttttttttctttttaatgtttaacattgttggatgtgaatgtctggccgcag

Basic information

species Glycine max
transcript GLYMA18G00920.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G00920.2 (Glycine max), 5'ss of exon 7
lower sequence: AT1G67325.2 (Arabidopsis thaliana), 5'ss of exon 8
TGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGgtctg--ctgcctttatttctattgtgc-atattgtgattaaattttttatgatggaaaaaaaattccatttactgtctaactttttttttctttttaa---tgtttaac--attgttggatgtgaatgtctggccgcag------------------------------------------------------
 || ||||| ||||||||||| || ||||| ||||| || || |||||||||||| | || |||||||| ||||||||||| || || ||||| || ||||| ||  |||| ||| ||| | ||   |  |   ||      |   | ||  ||       || |       ||||  ||| |    | |  |     |   || ||||   || || |   ||  ||| ||  |                                                           
CGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACTTCTCATTCAGAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAGgtttgtgctgcttttttttgtgtttgactgtcccgtagagcgaacatatac-attattgtgaactctagggcactggttaattcagatatcataaaacagcttgcttaattaatcgtagttcgtagatggcttacttggatagatcttgggattattttcttgatttctgacctttaaactcttctaattgcag

upper sequence: GLYMA18G00920.2 (Glycine max), 5'ss of exon 7
lower sequence: AT1G67325.1 (Arabidopsis thaliana), 5'ss of exon 7
TGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGgtctg--ctgcctttatttctattgtgc-atattgtgattaaattttttatgatggaaaaaaaattccatttactgtctaactttttttttctttttaa---tgtttaac--attgttggatgtgaatgtctggccgcag---------------------------------------------------------
 || ||||| ||||||||||| || ||||| ||||| || || |||||||||||| | || |||||||| ||||||||||| || || ||||| || ||||| ||  |||| ||| ||| | ||   |  |   ||      |   | ||  ||       || |       ||||  ||| |    | |  |     |   || ||||   || || |   ||  ||| ||  |                                                              
CGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACTTCTCATTCAGAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAGgtttgtgctgcttttttttgtgtttgactgtcccgtagagcgaacatatac-attattgtgaactctagggcactggttaattcagatatcataaaacagcttgcttaattaatcgtagttcgtagatggcttacttggatagatcttgggattattttcttgatttctgacctttaaactcttctaattgcagcag

upper sequence: GLYMA18G00920.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0010g03700.t01 (Vitis vinifera), 5'ss of exon 7
TGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGgtctg--ctgcctttatttctattgtgcatattgtgattaa-attttt--tatgatggaaaaaaaattccatttactgtctaactttttttttctttttaatgtttaacatt----gttggatgtgaatgtctggccgcag--------------------------------------
||| ||||||||||| ||||| |||||||| |||||||| || || || |||||| | || |||||||| |||||||| ||||| ||||||||||| ||||| ||  | || |||  ||  |   || | |    ||||   ||||||  ||| |  | |  ||| ||  ||  | |   || | |||| ||   | ||||  || || ||       |  ||  |||| | ||   | |                                       
TGATAATGACTGGACCTGTCCTAAATGTGGAAATGTCAACTTCTCTTTTAGAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCACAGgtttgagcagcgtttcgtttaagaatgtagaactagattgtcatttttaatatcacagcatgaaagttttatc-attcaatagccttttcttggatgttaaacttaaaaatctaacaatcaattggaatctttg-tagtatgtttattactttctaataattctctcttgcaaatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192312177|gb|FK005662.1|FK005662
EST:     GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAG                         GCCTCAAAGTCGGACAAAAATTCTA
genomic: GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGgtctgctgcc ... ctggccgcagGCCTCAAAGTCGGACAAAAATTCTA
EST: gi|254326113|gb|GR840705.1|GR840705
EST:     GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAG                         GCCTCAAAGTCGGACAAAAATTCTA
genomic: GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGgtctgctgcc ... ctggccgcagGCCTCAAAGTCGGACAAAAATTCTA
EST: gi|208241879|gb|GE041073.1|GE041073
EST:     GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAG                         GCCTCAAAGTCGGACAAAAATTCTA
genomic: GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGgtctgctgcc ... ctggccgcagGCCTCAAAGTCGGACAAAAATTCTA
EST: gi|31458741|gb|CD400769.1|CD400769
EST:     TGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAG                         GCCTCAAAGTCGGACTAAAATTCTA
genomic: TGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGgtctgctgcc ... ctggccgcagGCCTCAAAGTCGGACAAAAATTCTA
EST: gi|58022050|gb|CX708791.1|CX708791
EST:     GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAG                         GCCTCAAAGTCGGACAAAAATTCTA
genomic: GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGgtctgctgcc ... ctggccgcagGCCTCAAAGTCGGACAAAAATTCTA
EST: gi|4289526|gb|AI441488.1|AI441488
EST:     GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAG                         GCCTCAAAGTCGGACAAAAATTCTA
genomic: GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGgtctgctgcc ... ctggccgcagGCCTCAAAGTCGGACAAAAATTCTA
EST: gi|192312176|gb|FK005661.1|FK005661
EST:     GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAG                         GCCTCAAAGTCGGACAAAAATTCTA
genomic: GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGgtctgctgcc ... ctggccgcagGCCTCAAAGTCGGACAAAAATTCTA