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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGCTATTGTGGCTTTATCTGGAATTCTAAGCAGATTGCTGAGTAGTGGAACTATAATTGTGGCTACCAGTAATCGAGCACCAAAGGACTTAAATGAGgtgtgttctttactagtcaatctttcatagtatgtattgtcatttttacccattcttcagttgtgttacgggtcaataattacaccgttggcatccctgataattttctgttttggaggaatcagatcccctctcaacctagaccaattggaaacaaggcctcatacttgtctttttgtgcag

Basic information

species Glycine max
transcript GLYMA17G31700.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G31700.2 (Glycine max), 5'ss of exon 7
lower sequence: AT2G25530.1 (Arabidopsis thaliana), 5'ss of exon 8
ATTTGCTATTGTGGCTTTATCTGGAATTCTAAGCAGATTGCTGAGTAGTGGAACTATAATTGTGGCTACCAGTAATCGAGCACCAAAGGACTTAAATGAGgtgtgttctttactagtcaatctttcatagtatgtattgtcatttttacccattcttcagttgtgttacgggtcaataattacaccgttggcatccctgataattttctgttttggaggaatcagatcccctctcaacctagaccaattggaaacaaggcctcatacttgtctttttgtgcag
||||||||||||||| |||||||||||| | ||||||||| ||| || ||||||| |  ||||||| |||||||| |||||||||  ||| || ||| |||| |  | ||   |      |    |    | | |||| |||           |||| |  ||  ||   |    | |  || |  | |  ||         | ||| ||   || ||  |  |  |  | |   ||  | |        |                                
ATTTGCTATTGTGGCCTTATCTGGAATTATGAGCAGATTGTTGACTACTGGAACTGTTCTTGTGGCCACCAGTAACCGAGCACCACGGGAGTTGAATCAGgtttccttttcttttcctcgttaagccctct-tctattttcagcaaagaggtctctttaactgatttcatgaaggacatgtatattgattacaca------gagtttttgcgctg-agccactaattttcttgctaatgttgttggtacag--------------------------------

upper sequence: GLYMA17G31700.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0008g05270.t01 (Vitis vinifera), 5'ss of exon 7
ATTTGCTATTGTGGCTTTATCTGGAATTCTAAGCAGATTGCTGAGTAGTGGAACTATAATTGTGGCTACCAGTAATCGAGCACCAAAGGACTTAAATGAGgtgtgttctttactagtcaatctttcatagtatgtattgtcatttttacccattcttcagttgtgtta-cgggtcaataattacaccgttggcatccctgataattttctgttttggaggaatcagatcccctctcaacctagaccaattggaaacaaggcctcatacttgtctttttgtgcag
||||||| ||||||| |||||||||||| ||||||||||| |||||| ||||||| |  ||||||| |||||||||||||||||||| || |||||  ||||||||| |  | | | |   ||  ||    |    || |   |   ||    | |    || | ||| | | | ||   ||| |   |||     |   | ||||                                                                              
ATTTGCTGTTGTGGCCTTATCTGGAATTATAAGCAGATTGTTGAGTACTGGAACTGTTCTTGTGGCCACCAGTAATCGAGCACCAAATGATTTAAACCAGgtgtgttttcaaatggactcactgcca----actccttttttctaacacgtgatgtcagtttattttatcagtttaacttttatat-attgttgggc--aagaattc-----------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10233115|gb|BE802060.1|BE802060
EST:     GAACTATAATTGTGGCTACCAGTAATCGAGCACCAAAGGACTTAAATGAG                         GCTGGTATGCAAAAGGAAATATTCCAGAAACTTGTCTCCAAATTGGAAGAA
genomic: GAACTATAATTGTGGCTACCAGTAATCGAGCACCAAAGGACTTAAATGAGgtgtgttctt ... ttttgtgcagGCTGGTATGCAAAAGGAAATATTCCAGAAACTTGTCTCCAAATTGGAAGAA
EST: gi|11413065|gb|BF425006.1|BF425006
EST:     GAACTATAATTGTGGCTACCAGTAATCGAGCACCAAAGGACTTAAATGAG                         GCTGGTATGCAAAAGGAAATATTCCAGAAACTTGTCTCCAAATTGGAAGAA
genomic: GAACTATAATTGTGGCTACCAGTAATCGAGCACCAAAGGACTTAAATGAGgtgtgttctt ... ttttgtgcagGCTGGTATGCAAAAGGAAATATTCCAGAAACTTGTCTCCAAATTGGAAGAA