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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGATTAGACAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTCGAACTTACAAGCAGAGAGTGGTTCACCTTGTCAACTCAACTTCgtaaggcctggaatccctttccatgatattatataatgatgactgagtacaatattttactcattgtttcgtgttcattgtatttttagtaaaatgtattatttttatccaaacaatatagtagttattattatggtcttttccgtcaatttttccag

Basic information

species Glycine max
transcript GLYMA17G26440.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G26440.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os06g22650.1 (Oryza sativa), 5'ss of exon 7
GGGATTAGACAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTCGAACTTACAAGCAGAGAGTGGTTCACCTTGTCAACTCAACTTCgtaaggcctggaatccctttccatgatattatataatgatgactgagtacaatattttactcattgtttcgtgttcattgtatttttagtaaaatgtattatttttatccaaacaatatagtagttattattatggtcttttccgtcaatttttccag
||  | ||||||||||||||||| ||  | ||||| || |||||  ||||||||||||| ||||| || ||||||||||||||  ||||||  |     |    |       | |   |   | || |   | | ||     | |   | ||       |    |  || |||     | |   || ||                                                       
GGTCTAAGACAGGAGGTTATTGTGGACCTTGTGGATCAATGTCGTTCTTACAAGCAGAGGGTGGTACAGCTTGTCAACTCAACCACgtaagttccttttttatgtctttgcctttccaaccgtcat-atgaattgcagggaatcaggtagtgggaaacatgacatacatattt--ctgacttccttgtt-------------------------------------------------------

upper sequence: GLYMA17G26440.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g12880.1 (Oryza sativa), 5'ss of exon 7
GGGATTAGACAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTCGAACTTACAAGCAGAGAGTGGTTCACCTTGTCAACTCAACTTCgtaaggcctggaatccctttccatgatattatataatgatgactgagtacaatattttactcattgtttcgtgttcattgtatttttagtaaaatgtattatttttatccaaacaatatagtagttattattatggtcttttccgtcaatttttccag
||  | || |||||||| ||||| ||  | || || |||||||| |||||||||||||||||||| |  || || ||  | ||  ||| ||      ||  |   |   || |   ||||| |  | |||   |  || || |   | |  |||   ||       |   || |  |   || |||||    ||                                                  
GGACTAAGGCAGGAGGTAATTGTGGAGCTTGTTGATCAGTGTCGCACTTACAAGCAGAGAGTGGTACTACTAGTTAATGCTACCGCgtgagt-----aaatctaatatttggtga-atatagtttttact---tctaagatatggatgaa-gttgactgactgaacttccttgacaaccctggattatgggcatgt------------------------------------------------

upper sequence: GLYMA17G26440.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G077844_T03 (Zea mays), 5'ss of exon 7
GGGATTAGACAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTCGAACTTACAAGCAGAGAGTGGTTCACCTTGTCAACTCAACTTCgtaaggcctggaatccctttccatgatattatataatgatgactgagtacaatattttactcattgtttcgtgttcattgtat---ttttagtaaaatgtattatttttatccaaacaatatagtagttattattatggtcttttccgtcaatttttccag
||  | || |||||||| ||||| ||  | ||||| || |||||  | |||||||| |||||||| || |||||||||||||| ||||||| |   | ||    ||  |   | | | |  |  ||   |  | |||| ||   | | ||||||        | | |||   | | ||  ||| |   |                                                          
GGTCTAAGGCAGGAGGTCATTGTGGACCTTGTGGACCAATGTCGTTCATACAAGCAAAGAGTGGTGCAGCTTGTCAACTCAACATCgtaagtcactgcattatgttatactttttca-acgagtatatatacgaacaa-atgaaaataattgttaaa-acctagtatatggatatgagcgaaagggcct----------------------------------------------------------

upper sequence: GLYMA17G26440.2 (Glycine max), 5'ss of exon 7
lower sequence: AT4G32760.1 (Arabidopsis thaliana), 5'ss of exon 7
GGGATTAGACAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTCGAACTTACAAGCAGAGAGTGGTTCACCTTGTCAACTCAACTTCgtaag-gcctggaatccctttccatgatattatataatgatgactgagtacaatattttactcattgtttcgtgttcattgtatttttagtaaaatgt-attatttttatccaaacaatatagtagttattattatggtcttttccgtcaatttttccag
|   | | ||| |||||||| || ||| |||||||||||||||| || ||||| || |||||||| ||||| |||||||| |||||||||| ||     ||     ||   | |   || | ||               ||| |   |||| || || | |   || ||||| | |    | |  |  |||||| |    |                                             
GATCTCAAACAAGAGGTTATGGTCGATCTGGTGGAGCAGTGTCGTACATACAAACAAAGAGTGGTGCACCTCGTCAACTCGACTTCgtaagagctctttattttcctcttcggttccatttgat---------------tatctctttcat-gtctcatataagttatatttcttggggtacgagacgatttttttttttat--------------------------------------------

upper sequence: GLYMA17G26440.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0008g03720.t01 (Vitis vinifera), 5'ss of exon 7
GGGATTAGACAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTCGAACTTACAAGCAGAGAGTGGTTCACCTTGTCAACTCAACTTCgtaaggcctggaatccctttccatgatattatataatgatgactgagtacaatattttactcattgtttcgtgtt-cattgtatttttagtaaaatgtattatttttatccaaacaatatagtagttattattatggtcttttccgtcaatttttccag
||| | || |||||||||||  | || ||||| || |||||||| || |||||||| |||||||| |||||||||||||||||| ||| ||||||   |   |||| | || ||  ||    || | |||          || || |||||||  | | |  | ||| ||| ||   |     |  |  |  || | | |||                                           
GGGCTCAGGCAGGAGGTTATCATGGACTTGGTAGATCAGTGTCGGACATACAAGCAAAGAGTGGTCCACCTTGTCAACTCAACTGCgtgaggcctcatacttcttttcttgttac-atgctttgttaact----------ttgtaatcattgtaccatatcactttgcattattttca-----tgcttctgctacctagaca-------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16105990|gb|BI893730.1|BI893730
EST:     CAGTGTCGAACTTACAAGCAGAGAGTGGTTCACCTTGTCAACTCAACTTC                         GGATGAATCACTGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGC
genomic: CAGTGTCGAACTTACAAGCAGAGAGTGGTTCACCTTGTCAACTCAACTTCgtaaggcctg ... atttttccagGGATGAATCACTGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGC