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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTGGGACAGATGAATTAAGTGTATATTTAGATAAGTATCGAATAGAGTTGGACCCTCATCTTGCAGCACTTATCGGGAGgtttgtctgtgcttacatagtttagtatatatgttgcttttgttaaataaagctatttttttaactaagaagacactccaaatattgtgacag

Basic information

species Glycine max
transcript GLYMA17G17520.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11688714|gb|BF596390.1|BF596390
EST:     ACTTATCGGGAG                         GCATAGCCGCAAGCCATGGGCGAAGTTCATTAATGTAGAAAATCATCACTT
genomic: ACTTATCGGGAGgtttgtctgt ... attgtgacagGCATAGCCGCAAGCCATGGGCGAAGTTCATTAATGTAGAAAATCATCACTT
EST: gi|18734981|gb|BM528497.1|BM528497
EST:     GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAG                         GCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCAC
genomic: GATAAGTATCGAATAGAGTTGGACCCTCATCTTGCAGCACTTATCGGGAGgtttgtctgt ... attgtgacagGCATAGCCGCAAGCCATGGGCGAAGTTCATTAATGTAGAAAATCATCAC
EST: gi|10231684|gb|BE800572.1|BE800572
EST:     GCACTTATCGGGAG                         GCATAGCCGCAAGCCATGGGCGAAGTTCATTAATGTAGAAAATCATCACTT
genomic: GCACTTATCGGGAGgtttgtctgt ... attgtgacagGCATAGCCGCAAGCCATGGGCGAAGTTCATTAATGTAGAAAATCATCACTT
EST: gi|21887281|gb|BQ740494.1|BQ740494
EST:     GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAG                         GCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
genomic: GATAAGTATCGAATAGAGTTGGACCCTCATCTTGCAGCACTTATCGGGAGgtttgtctgt ... attgtgacagGCATAGCCGCAAGCCATGGGCGAAGTTCATTAATGTAGAAAATCATCACTT
EST: gi|17963627|gb|BM270374.1|BM270374
EST:     GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAGCACTTATCGGGAG                         GCATAGCCGCAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACAT
genomic: GATAAGTATCGAATAGAGTTGGACCCTCATCTTGCAGCACTTATCGGGAGgtttgtctgt ... attgtgacagGCATAGCCGCAAGCCATGGGCGAAGTTCATTAATGTAGAAAATCATCACTT
EST: gi|14126494|gb|BG790932.1|BG790932
EST:     GAATAGAGTTGGACCCTCATCTTGCAGCACTTATCGGAAG                         GCATACCCGCAAGCCATGGGCGAAGTTCATTAATGTAGAAAATCATCACTT
genomic: GAATAGAGTTGGACCCTCATCTTGCAGCACTTATCGGGAGgtttgtctgt ... attgtgacagGCATAGCCGCAAGCCATGGGCGAAGTTCATTAATGTAGAAAATCATCACTT
EST: gi|14260055|gb|BG882963.1|BG882963
EST:     GATAAGTATCGAATAGAGTTGGACCCACATCTTGCAACACTTATCGGGAG                         GCATAGCCGCAAGCCATGGGCAAAGTTCATTAAT
genomic: GATAAGTATCGAATAGAGTTGGACCCTCATCTTGCAGCACTTATCGGGAGgtttgtctgt ... attgtgacagGCATAGCCGCAAGCCATGGGCGAAGTTCATTAAT
EST: gi|254330876|gb|GR842141.1|GR842141
EST:     GATAAGTATCGAATAGAGTTGGACCCTCATCTTGCAGCACTTATCGGGAG                         GCATAGCCGCAAGCCATGGGCGAAGTTCATTAATGTAGAAAATCATCACTT
genomic: GATAAGTATCGAATAGAGTTGGACCCTCATCTTGCAGCACTTATCGGGAGgtttgtctgt ... attgtgacagGCATAGCCGCAAGCCATGGGCGAAGTTCATTAATGTAGAAAATCATCACTT