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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCCATTTCGACTTGTTGCTGAGGAGGGGAAATCTAAATGCTCTTGGGTGAATCTTGATGACATCTCAAATACCTATGTTAGAGgtgtacatgacggtttttacaattcactattctttttccttattctcaaatcaatacagtagtattcccaaattttaattgtgtctgtctgcttccttac...

Basic information

species Glycine max
transcript GLYMA17G15510.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G15510.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os06g08730.1 (Oryza sativa), 5'ss of exon 7
GGTCCATTTCGACTTGTTGCTGAGGAGGGGAAATCTAAATGCTCTTGGGTGAATCTTGATGACATCTCAAATACCTATGTTAGAGgtgtaca----tgacggtttttacaattcact--attctttttccttattctcaaatcaatacagtagtattcccaaattttaattgtgtctgtctgcttccttac----------------------------
|| ||||||||||||||||||||||| ||||| || ||||| || ||||| | |||||| |||||| | |||  ||   | ||||||  | |    | |  ||   |   || || |  ||   ||     |||| |  ||  |    |    |  ||| | |||   ||  |||   |    |    ||                             
GGGCCATTTCGACTTGTTGCTGAGGAAGGGAAGTCCAAATGTTCCTGGGTTAGTCTTGACGACATCACCAATGGCTTGATAAGAGgtaaataccagttatagtaaattgtatgcaatgaatagattgattatattatttaaagagcgtaactctgatcctagattagtatgatgtgctttgaatgaactaattatgaaaaactcattcctattatgcag

upper sequence: GLYMA17G15510.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G154892_T01 (Zea mays), 5'ss of exon 7
GGTCCATTTCGACTTGTTGCTGAGGAGGGGAAATCTAAATGCTCTTGGGTGAATCTTGATGACATCTCAAATACCTATGTTAGAGgtgtacatgacggtttttacaattcactattctttttccttattctcaaatcaatacagtagtattcccaaattttaattgtgtctgtctgcttccttac---------------------------
|| |||||||||||||||||||||||||||||||| ||||| || ||||| | ||||||||||||| | |||  ||   | ||||||  |  || |   ||| |  |||    | |  |||| |  ||     ||  |  |   |  |  | |     |   ||      ||    | |  | |                            
GGGCCATTTCGACTTGTTGCTGAGGAGGGGAAATCCAAATGTTCCTGGGTTAGTCTTGATGACATCACTAATTGCTTGATAAGAGgtaaat-tggctcatttaattatttgtaactgatttttc--atggaggaaatagcatgattctgatactgggatgacataacagatgaactcatagtcatagtaaccattttgttgtcatgatgcag