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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGCTAAAGTTGATTTTGGCAATGATGTTTTAGGACTTGGCTGGAGCTATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttggctctctcaaatcctgtataaaaaacatatttatccatctcttagattctattccataatttgtgaatttatattacag

Basic information

species Glycine max
transcript GLYMA17G13440.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G13440.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os12g27520.4 (Oryza sativa), 5'ss of exon 8
GCAAGCTAAAGTTGATTTTGGCAATGATGT-TTTAGGACTTGGCTGGAGCTATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttggctctctcaaatcctgtataaaaaacatatttatccatctcttagattctattccataatttgtgaatttatattacag
      ||   |||   | |    || | | || ||||||||| ||||| || || |||||||| |||||||| || |||||  |||||||| |||||||||||||||  | |   |  |||  |   |    |   |||     || |     |||| |      | | ||  |||    ||   |||
-ATGTTTACGATTGGAATGGCTGTTGTTCTGTTCAGGACTTGGATGGAGTTACCCCTGTGATATATGGAGTGTTGGTTGTATACTGGTTGAGCTATGCACGgtatgtt--gttgggtgcaatatttggtttgtattctatcacaacaacagcaggatttt------tgagttacgaaagc-taccgcag

upper sequence: GLYMA17G13440.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os12g27520.1 (Oryza sativa), 5'ss of exon 9
GCAAGCTAAAGTTGATTTTGGCAATGATGTTTTAGGACTTGGCTGGAGCTATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttggctctctcaaatcctgtataaaaaacatatttatccatctcttagattctattccataatttgtgaatttatattacag
                                   ||||||| ||||| || || |||||||| |||||||| || |||||  |||||||| |||||||||||||||  | |   |  |||  |   |    |   |||     || |     |||| |      | | ||  |||    ||   |||
-----------------------------------GACTTGGATGGAGTTACCCCTGTGATATATGGAGTGTTGGTTGTATACTGGTTGAGCTATGCACGgtatgtt--gttgggtgcaatatttggtttgtattctatcacaacaacagcaggatttt------tgagttacgaaagc-taccgcag

upper sequence: GLYMA17G13440.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G179308_T03 (Zea mays), 5'ss of exon 8
GCAAGCTAAAGTTGATTTTGGCAATGATGTTTTAGGACTTGGCTGGAGCTATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttggctctctcaaatcctgtataaaaaacatatttatccatctcttagattctattccataatttgtgaatttatattacag
                                   ||||||| ||||| || |||||||||||||||||||| || |||||  | |||||| | |||||||||||||    |  ||    |    | |   |   | |  ||   |     |   ||     | |   | ||                
-----------------------------------GACTTGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTGTTGAGCTTTGCACGgtatgttattgtgccttgg-tttgattttgcatgtacaagtacagaggatctgagttac---caaggttctgcag-------------

upper sequence: GLYMA17G13440.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G063792_T01 (Zea mays), 5'ss of exon 4
GCAAGCTAAAGTTGATTTTGGCAATGATGTT--TTAGGACTTGGCTGGAGCTATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttggctctctcaaatcctgtataaaaaacatatttatccatctcttagattctattccataatttgtgaatttatattacag
    |  | | || ||  | |    ||| ||  | ||||| ||| ||||| || |||||||||||||||||||| || |||||  | |||||| | |||||||||||||       |          | |   |   | |  || |      |  ||     || |  |  ||||| |            
--TGGTGATATTTTATGATTGTGTGGATCTTGTTCAGGACATGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTGTTGAGCTTTGCACGgtatgttaatgggaccttggcttcatttggcatgtacaagtaccaggggatctga----gttaccaaggttgtgcag-----------

upper sequence: GLYMA17G13440.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G063792_T06 (Zea mays), 5'ss of exon 7
GCAAGCTAAAGTTGATTTTGGCAATGATGTTTTAGGACTTGGCTGGAGCTATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttggctctctcaaatcctgtataaaaaacatatttatccatctcttagattctattccataatttgtgaatttatattacag
                                   ||| ||| ||||| || |||||||||||||||||||| || |||||  | |||||| | |||||||||||||       |          | |   |   | |  || |      |  ||     || |  |  ||||| |            
-----------------------------------GACATGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTGTTGAGCTTTGCACGgtatgttaatgggaccttggcttcatttggcatgtacaagtaccaggggatctga----gttaccaaggttgtgcag-----------

upper sequence: GLYMA17G13440.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G24740.2 (Arabidopsis thaliana), 5'ss of exon 8
GCAAGCTAAAGTTGATTTTGGCAATGATGTTTTAGGACTTGGCTGGAGCTATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttggctctctcaaatcctgtataaaaaacatatttatccatctcttagattctattccataatttgtgaatttatattacag
                                   | ||||||||||| ||||| |||||| | ||||| || ||||||||| | || ||||| |||||||| ||      | ||| || |  |  ||    ||   || | |     ||||      ||||  |  |||||   |||| ||      
-----------------------------------GTCTTGGCTGGAGTTATCCGTGTGATGTTTGGAGCGTTGGATGTATCATAGTGGAGTTGTGCACGgtgtg------tgtctgaagtagttgattgttaatgaatgtttgggagtctt-----ttattgaaagatttg-agatttgtag-----

upper sequence: GLYMA17G13440.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 9
GCAAGCTAAAGTTGATTTTGGCAATGATGTTTTAGGACTTGGCTGGAGCTATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttggctctctcaaatcctgtataaaaaacatatttatccatctcttagatt--ctattccataatttgtgaatt-tatattacag--
                                   | ||||| ||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||| ||||   |   | || | |  |  |       | ||| |       || || |    |    || ||     | || |  ||||||   
-----------------------------------GGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGGTGGAGTTATGCACGgtacgttta-ttaattaaattgcaatgcatgttgtctctttttgtcggcattggaatgatgaggttatgatgcaacatttattcattacacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193703915|gb|FK634803.1|FK634803
EST:     TGATATCTAGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: TGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|9204054|gb|BE330278.1|BE330278
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|151400202|gb|EV270016.1|EV270016
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|21602499|gb|BQ612830.1|BQ612830
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|15813777|gb|BI786052.1|BI786052
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|23728459|gb|BU762283.1|BU762283
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGGCTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|207847382|gb|GD820423.1|GD820423
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|208051460|gb|GD845927.1|GD845927
EST:     GGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: GGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|151400815|gb|EV270629.1|EV270629
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|208123639|gb|GD924541.1|GD924541
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG