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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGAGCATTCAGCACTTGCTGCTAGGTTGGCAGCTGGGTTATGTGCTGATCTAGCATCAGCAATTGTTTCTGAGCGAGCCAAAAATGGATTTGCTTTGgtatgaatcattgagttacctctgaaaactatcatcattagttgcagtttaaggttgctatctattaactattaattttattttttccctctataaatcag

Basic information

species Glycine max
transcript GLYMA17G13000.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G13000.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv17s0000g04120.t01 (Vitis vinifera), 5'ss of exon 11
CAATGAGCATTCAGCACTTGCTGCTAGGTTGGCAGCTGGGTTATGTGCTGATCTAGCATCAGCAATTGTTTCTGAGCGAGCCAAAAATGGATTTGCTTTGgtatgaatcattgagttacctctga-aaactatcatcattagttg-cagt--ttaaggttgctatctattaactattaatttt----attttttccctcta--taaatcag
 |||||||||||||||||||||||| || | |||||||| |||||||||||||| || || |||||| ||||||  || ||||||||||| |||||||||||||||   |||  |     |||   ||   ||   ||   |||| || |  |  | |  |  || || | |    || ||||    ||||||     |||  | | ||||
TAATGAGCATTCAGCACTTGCTGCTCGGCTTGCAGCTGGTTTATGTGCTGATCTTGCTTCTGCAATTTTTTCTGGACGTGCCAAAAATGGTTTTGCTTTGgtatgagaaattttgcactttcttttaagtcattcccagatgttgtcaatagtacatggggaaatttagtgatatatagttttttgaatttttctttcctaattgactcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299034|gb|FG990376.1|FG990376
EST:     ATCTAGCATCAGCAATTGTTTCTGAGCGAGCCAAAAATGGATTTGCTTTG                         GTTAGGCCTCCTGGTCATCATGCTGGTGTAAGACATGCAATGGGGTTCTGC
genomic: ATCTAGCATCAGCAATTGTTTCTGAGCGAGCCAAAAATGGATTTGCTTTGgtatgaatca ... tataaatcagGTTAGGCCTCCTGGTCATCATGCTGGTGTAAGACATGCAATGGGGTTCTGC
EST: gi|5687823|gb|AI940895.1|AI940895
EST:     ATCTAGCATCAGCAATTGTTTCTGAGCGAGCCAAAAATGGATTTGCTTTG                         GTTAGGCCTCCTGGTCATCATGCTGGTGTAAGACATGCAATGGGGTTCTGC
genomic: ATCTAGCATCAGCAATTGTTTCTGAGCGAGCCAAAAATGGATTTGCTTTGgtatgaatca ... tataaatcagGTTAGGCCTCCTGGTCATCATGCTGGTGTAAGACATGCAATGGGGTTCTGC