1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTTCTTTAGTTGGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAGgtatattttttttctggtcttataaaattctttccagattgaagttctttaggtatattctttttttcttcttcacataatcacattagtcctaaagcaatatttcactctaaatgcag
species | Glycine max |
transcript | GLYMA17G10770.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAG GTTGCAGAATTAATCAAGGATGATTTATGGCCAAATCCACTCACTTATTTCEST: gi|19348513|gb|BM893045.1|BM893045
genomic: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAGgtatattttt ... ctaaatgcagGTTGCAGAATTAATCAAGGATGATTTATGGCCAAATCCACTCACTTATTTC
EST: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAG GTTGCAGAATTAATCAAGGATGATTTATGGCCAAATCCACTCACTTATTTCEST: gi|192297142|gb|FG988238.1|FG988238
genomic: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAGgtatattttt ... ctaaatgcagGTTGCAGAATTAATCAAGGATGATTTATGGCCAAATCCACTCACTTATTTC
EST: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAG GTTGCAGAATTAATCAAAGATGATTTATGGCCAAATCCACTCACTTATTTCEST: gi|151411023|gb|EV280834.1|EV280834
genomic: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAGgtatattttt ... ctaaatgcagGTTGCAGAATTAATCAAGGATGATTTATGGCCAAATCCACTCACTTATTTC
EST: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAG GTTGCAGAATTAATEST: gi|192323321|gb|FK018972.1|FK018972
genomic: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAGgtatattttt ... ctaaatgcagGTTGCAGAATTAAT
EST: GGTTTAGTGGCTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAG GTTGCAGAATTAATCAAAGATGATTTATGGCCAAATCCACTCACTTATTTCEST: gi|192295571|gb|FG988145.1|FG988145
genomic: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAGgtatattttt ... ctaaatgcagGTTGCAGAATTAATCAAGGATGATTTATGGCCAAATCCACTCACTTATTTC
EST: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAG GTTGCAGAATTAATCAAAGATGATTTATGGCCAAATCCACTCACTTATTTCEST: gi|192301153|gb|FG988018.1|FG988018
genomic: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAGgtatattttt ... ctaaatgcagGTTGCAGAATTAATCAAGGATGATTTATGGCCAAATCCACTCACTTATTTC
EST: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAG GTTGCAGAATTAATCAAGGATGATTTATGGCCAAATCCACTCACTTATTTCEST: gi|23726918|gb|BU761468.1|BU761468
genomic: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAGgtatattttt ... ctaaatgcagGTTGCAGAATTAATCAAGGATGATTTATGGCCAAATCCACTCACTTATTTC
EST: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAG GTTGCAGAATTAATCAAGGATGATTTATGGCCAAATCCACTCACTTATTTCEST: gi|151397156|gb|EV267029.1|EV267029
genomic: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAGgtatattttt ... ctaaatgcagGTTGCAGAATTAATCAAGGATGATTTATGGCCAAATCCACTCACTTATTTC
EST: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAG GTTGCAGAATTAATCAAAGATGATTTATGGCCAAATCCACTCACTTATTTCEST: gi|22926873|gb|BU544012.1|BU544012
genomic: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAGgtatattttt ... ctaaatgcagGTTGCAGAATTAATCAAGGATGATTTATGGCCAAATCCACTCACTTATTTC
EST: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAG GTTGCAGAATTAATCAAGGATGATTTATGGCCAAATCCACTCACTTATTTCEST: gi|41146310|gb|CK606521.1|CK606521
genomic: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAGgtatattttt ... ctaaatgcagGTTGCAGAATTAATCAAGGATGATTTATGGCCAAATCCACTCACTTATTTC
EST: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAG GTTGCAGAATTAATCAAGGATGATTTATGGCCAAATCCACTCACTTATTTNEST: gi|192309887|gb|FK001431.1|FK001431
genomic: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAGgtatattttt ... ctaaatgcagGTTGCAGAATTAATCAAGGATGATTTATGGCCAAATCCACTCACTTATTT-
EST: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAG GTTGCAGAATTAATCAAG-ATGATTTATGGCCAAATCCACTCACTTATTTC
genomic: GGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAGgtatattttt ... ctaaatgcagGTTGCAGAATTAATCAAGGATGATTTATGGCCAAATCCACTCACTTATTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTTTAGTTGGTTTAGTGACTGTGAGCAGAAAGATGATGTGGATGAAATTCATGACGAGgtatattttttttctggtcttataaaattctttccagattgaagttctttaggtatattctttttttcttcttcacataatcacattagtcctaaagcaatatttcactctaaatgcag
- - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - AAGATG