Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAATGAACTTGCAACTACCACAGGACAAGAGTTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATCAAATCTCTCAAGGTTGGGGACTTCCAAGgtatgctaaggtgtatgctttggtaagtattgcatactaaaggtgcaaggggctcatgtattcttgaacatctgtttcag

Basic information

species Glycine max
transcript GLYMA17G08660.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G08660.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv17s0000g07440.t01 (Vitis vinifera), 5'ss of exon 7
TGGAATGAACTTGCAACTACCACAGGACAAGAGTTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATCAAATCTCTCAAGGTTGGGGACTTCCAAGgtatgctaaggtgtatgctttgg--taagtattg-catactaa--aggtgca-----aggggctcatgtattcttgaacatc-tgtttcag-------------------------
|||||||| | ||| ||||    ||| || || ||  |||| | || |||||||| |||| |||||||||| |||||||| || ||||| |||||||||||||        ||| | |||     |  |||||   ||   ||  |||  ||     |    ||   | ||  |   |  || |||||                            
TGGAATGATCATGCTACTAATGTAGGGCAGGAATTGTTGGATAATGCTGATAAATTTCCAATTGTTGCAATTAAATCTCTTAAAGTTGGAGACTTCCAAGgtaattctccttgttttcttgaagtttggtattaatatggcaattaggcacattctcaaaaacttgagaatgataagaagtcctgtttgtaatgttctcttcatatcttgttttag

upper sequence: GLYMA17G08660.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0047g00870.t01 (Vitis vinifera), 5'ss of exon 3
TGGAATGAACTTGCAACTACCACAGGACAAGAGTTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATCAAATCTCTCAAGGTTGGGGACTTCCAAGgtatgctaaggtgtatgctttgg--taagtattgc-atactaa--aggtgca-----aggggctcatgtattcttgaacatctgtttcag----------
                              || ||  |||| | || |||||||| |||| || ||||||| ||||||||||| ||||| |||||||||||||        ||| | |||     |  |||||   ||   ||  | |  ||     |    ||   | ||  |   |  ||   ||             
------------------------------GAATTGTTGGATAATGCTGATAAATTTCCAATTATTGCAATTAAATCTCTCAAAGTTGGAGACTTCCAAGgtaattccccttgttttcttgaagtttggtattattatggcaattaagcacattctcaaaaacttgagaatgataagaagtcctctttgtaatgttctct

upper sequence: GLYMA17G08660.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0587g00010.t01 (Vitis vinifera), 5'ss of exon 3
TGGAATGAACTTGCAACTACCACAGGACAAGAGTTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATCAAATCTCTCAAGGTTGGGGACTTCCAAGgta--------tgctaaggtgtatgctttggtaagtattgcatactaaaggtgcaaggggctcat-----gtattcttg--aacatctgtttcag---------------------------------
                            | || ||  |||| | || |||||||| |||| |||||||||| ||||||||||| ||||| |||||||||||||        || |    || ||  ||   | | ||| |||     ||    || | |  | ||     ||  ||||   ||  |    ||||                                  
----------------------------AGGAATTGTTGGATAATGCTGATAAATTTCCAATTGTTGCAATTAAATCTCTCAAAGTTGGAGACTTCCAAGGTAATTCCCCTTGTTTTCTTGAATTTTTgtattattatggcaattctaaaaaacatgagaatgataagaagtcctctttgtaatgttctcttcatatcttgttttagttgtatcactgtcaacatcga

upper sequence: GLYMA17G08660.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv03s0088g00230.t01 (Vitis vinifera), 5'ss of exon 3
TGGAATGAACTTGCAACTACCACAGGACAAGAGTTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATCAAATCTCTCAAGGTTGGGGACTTCCAAGgtatgctaaggtgtatgctttgg--taagtattgc-atactaa--aggtgca-----aggggctcatgtattcttgaacatctgtttcag--------------------------
                              || ||  |||| | || |||||||| |||| || ||||||| ||||||||||| ||||| |||||||||||||        ||| | |||     |  |||||   ||   ||  | |  ||     |    ||   | ||  |   |  ||   ||                             
------------------------------GAATTGTTGGATAATGCTGATAAATTTCCAATTATTGCAATTAAATCTCTCAAAGTTGGAGACTTCCAAGgtaattccccttgttttcttgaagtttggtattattatggcaattaagcacattctcaaaaacttgagaatgataagaagtcctctttgtaatgttctcttcatatcttgttttag

upper sequence: GLYMA17G08660.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0037g00650.t01 (Vitis vinifera), 5'ss of exon 3
TGGAATGAACTTGCAACTACCACAGGACAAGAGTTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATCAAATCTCTCAAGGTTGGGGACTTCCAAGgtatgctaaggtgtatgctt------tggta--agtattgcatactaaaggtgcaaggggctcat-----gtattcttg--aacatctgtttcag-----
|||||||| | ||| ||||    ||| || |||||  |||| | || |||||||| |||| |||||||||| ||||||||||| ||||| |||||||||||||        ||| | |||      |||||  | ||| |||     ||    || | |  | ||     ||  ||||   ||  |    ||||      
TGGAATGATCATGCTACTAATGTAGGGCAGGAGTTGTTGGATAATGCTGATAAATTTCCAATTGTTGCAATTAAATCTCTCAAAGTTGGAGACTTCCAAGgtaattccccttgttttcttgaattttggtattattatggcaattctaaaaaacatgagaatgataagaagtcctctttgtaatgttctcttcatatctt