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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGGATGCCCAAGTGGCTTATGGTTTCCATCATCTACGCAATGAAAAACCTTACCTTGCCAGTGGTCCAATTTCAAATAAGgtatctatggagatgtggaatgtgttttataaattaccttcttgcttgcttgcttgcttcactttacttaatttgatgttacagttttttgaaggtattc...

Basic information

species Glycine max
transcript GLYMA17G07480.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07480.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G57690.1 (Arabidopsis thaliana), 5'ss of exon 5
-----------------GAATGGATGCCCAAGTGGCTTATGGTTTCCATCATCTACGCAATGAAAAACCTTACCTTGCCAGTGGTCCAATTTCAAATAAGgtatctatggagatgtggaatgtgttttataaattaccttcttgcttgcttgcttgcttcactttacttaatttgatgttacagttttttgaaggtattc
                 | |||||||| ||||||||||| ||||| || ||| | ||||| ||||| ||||||||||| | ||| || ||  | |||||||| | ||   |  | |    || |  | |||| || |  |    |||  ||  ||   |||    |   ||  | |  ||     || ||| ||      
CAATTACTTTAGTATAGGTATGGATGCTCAAGTGGCTTACGGTTTTCACCATTTGCGCAACGAAAAGCCTTACCTTGCAAATGGCCCTATCGCCAATAAGgt-tttaccaaattctc--ttgagaatgataattttctctaagacttttttttttatatcaaga-aagaaagctaacattttg--ttgttgcag------

upper sequence: GLYMA17G07480.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0052g01840.t01 (Vitis vinifera), 5'ss of exon 7
GAATGGATGCCCAAGTGGCTTATGGTTTCCATCATCTACGCAATGAAAAACCTTACCTTGCCAGTGGTCCAATTTCAAATAAGgtatctatggagatgtggaatgtgtt---ttataaattaccttcttgcttgcttgcttgcttcactttacttaatttgatgttacagttttttgaaggtattc
| |||||||||||||| || ||||| || |||||| |||| ||||||| ||||||||||||    |||||||||||||||||||| |   | ||  | |  | | | ||   || || |  |  ||| |  || | |   |  | ||||  |||      || ||||   |||   ||    | | 
GCATGGATGCCCAAGTTGCCTATGGCTTTCATCATTTACGGAATGAAAGACCTTACCTTGCACAAGGTCCAATTTCAAATAAGgtctgattcgatctctttacttttttgagttttataccatgttcgtaatttccttactaatgcactcaactcgggaaga-gttatgattta--gattacagtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254319479|gb|GR830730.1|GR830730
EST:     ATCTACGCAATGAAAAACCTTACCTTGCCAGTGGTCCAATTTCAAATAAG                         ATTATATACTCGGGTTAC
genomic: ATCTACGCAATGAAAAACCTTACCTTGCCAGTGGTCCAATTTCAAATAAGgtatctatgg ... ttggttgcagATTATATACTCGGGTTAC