Sequence
atgc intronic sequence ATGC exonic sequenceCAAGTAAAGACTCAACAAATGCATGAGATGAAGAAGAAGGAAAAAGAATACATAAAGTTGCAGgtgtgatatctttgattttgtttttattctgatgagaaccatatttggtgattagtgcttttacatgataggaacttacgcgggtccacatattattagatttggaaatgatgaagggctggtattttgtatttgcag
Basic information
species | Glycine max |
transcript | GLYMA17G07040.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G07040.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G147500_T04 (Zea mays), 5'ss of exon 7
CAAGTAAAGACTCAACAAATGCATGAGATGAAGAAGAAGGAAAAAGAATACATAAAGTTGCAGgtgtgatatctttgattttgtttttattctgatgagaaccatatttggtgattagtgcttttacatgataggaacttacgcgggtccacatattattagatttggaaatgatgaagggctggtattttgtatttgcag
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CAAGTACGCACCCAGCAAATTCATGAAATGAAGAAGAAAGAGAAAGAATACATAAAGTTGCAGgtatg-tatttatacctttaggccttgtttgggtattctagtattcacc--ccaatccacatgtattgaggtggattg---gggtgtaaattaatttacaccccaa--------------------------------
upper sequence: GLYMA17G07040.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0052g00890.t01 (Vitis vinifera), 5'ss of exon 7
CAAGTAAAGACTCAACAAATGCATGAGATGAAGAAGAAGGAAAAAGAATACATAAAGTTGCAGgtgtgatatctttgattt-tgtttttat---------tctgatgagaaccatatttggtgattagtgcttttacatgataggaacttacgcgggt--ccacatattattagatttggaaatgatgaagggctggtattttg----tatttgcag-----------
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CAAGTGAGGACTCAACAAATTCATGAGATGAAGAAAAAAGAGAAGGAATACATAAAATTGCAGgtaggatcctttccatgtgtattattatgatattatcttttaggggaaacttaaa-ggttgctcatgttagcaaatgggaacatctttcatgaatgacaacatatatggagaacaggagaagttcatgagtaggaaattggggaatgattgtgtttcacttgcag
upper sequence: GLYMA17G07040.2 (Glycine max), 5'ss of exon 7
lower sequence: PP1S47_178V6.1 (Physcomitrella patens), 5'ss of exon 7
CAAGTAAAGACTCAACAAATGCATGAGATGAAGAAGAAGGAAAAAGAATACATAAAGTTGCAGgtgtgatatctttgattttgtttttattctgatgagaaccatatttggtgattagtgcttttacatgataggaacttacgcgggtccacatattattagatttggaaatgatgaagggctggtattttgtatttgcag
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CAAGTGAAGACTCAGCAGATGCACGAGTTAAAGAAGAAAGAGAAGGAATACATCAAGTTGCAGgtataaggaattttcttgtcttaataatttcttttacagcgtattcctagacgactggttctcttttgcataat---------gtttctatcatatttgaattga----ggtgaatgtatatcgtctggtacag----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192323206|gb|FK016337.1|FK016337EST: AACAAATGCATGAGATGAAGAAGAAGGAAAAAGA-TACATAAAGTTGCAG GAGAGGCTAAACCAAGCGTTGATGGAGAAGAAGAAAGAGTCTAGGTCAG
genomic: AACAAATGCATGAGATGAAGAAGAAGGAAAAAGAATACATAAAGTTGCAGgtgtgatatc ... gtatttgcagGAGAGGCTAAACCAAGTGTTGATGGAGAAGAAGAAAGAGTCTAGGTCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAGTAAAGACTCAACAAATGCATGAGATGAAGAAGAAGGAAAAAGAATACATAAAGTTGCAGgtgtgatatctttgattttgtttttattctgatgagaaccatatttggtgattagtgcttttacatgataggaacttacgcgggtccacatattattagatttggaaatgatgaagggctggtattttgtatttgcag
- - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - AAAGAA