1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAAGAGCAGTGGTTTCTCTAGAGGGGCCTCTATATACAGAGGAGTAACGAGgtatttgtctagtactttcacgttttaacgttatgtggcctctttttcattcattttggctgctagcggatatctttttgattctgaatgaataaaaataaattgattcag
species | Glycine max |
transcript | GLYMA17G07010.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGAGCAGTGGTTTCTCTAGAGGGGCCTCTATATACAGAGGAGTAACGAG ACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAAEST: gi|298165452|gb|HO011501.1|HO011501
genomic: AAGAGCAGTGGTTTCTCTAGAGGGGCCTCTATATACAGAGGAGTAACGAGgtatttgtct ... attgattcagACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAA
EST: GGGGCCTCTATATACAGAGGAGTAACGAG ACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAAEST: gi|14259710|gb|BG882618.1|BG882618
genomic: GGGGCCTCTATATACAGAGGAGTAACGAGgtatttgtct ... attgattcagACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAA
EST: AAGAGCAGTGGTTTCTCTAGAGGGGCCTCTATATACAGAGGAGTAACGAG ACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAA
genomic: AAGAGCAGTGGTTTCTCTAGAGGGGCCTCTATATACAGAGGAGTAACGAGgtatttgtct ... attgattcagACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGAGCAGTGGTTTCTCTAGAGGGGCCTCTATATACAGAGGAGTAACGAGgtatttgtctagtactttcacgttttaacgttatgtggcctctttttcattcattttggctgctagcggatatctttttgattctgaatgaataaaaataaattgattcag
- AGAGCA
- GAGCAG
- - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - GAGGAG