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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGgtttgtttcttttcggaatcagcaggcatgaaatagtcacttcatttccacatttattcttacagcttttggtgttttccattctaatggtag

Basic information

species Glycine max
transcript GLYMA17G05530.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05530.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os11g40510.1 (Oryza sativa), 5'ss of exon 7
TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGgtttgtttcttttcggaatcagcaggca-tgaaatagtcac--ttcatttccacatttattcttacagctttt-ggtgttttccattctaatggtag-----------------
 ||||| |||||||||||||||||||| || || || ||||| || ||||| |||||||||||  | |||||||||| | ||  || || ||  || | ||    |||||||  |||   |||| ||||   | |    | ||  |                   
AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgtagtgtcattgtgacagtttaatttt-tatttatttgtacttttttttggtgcggtgctgattgatcatctttgttattcattgacag

upper sequence: GLYMA17G05530.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM5G835213_T01 (Zea mays), 5'ss of exon 8
TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGgtttgtttcttttcggaatcagcaggca-tgaaatagtcacttcatttccacatttattcttac----agcttttggtgttttccattctaatggtag-------------------
 ||||| ||||| |||||||| ||||| ||||| || ||||| || ||||| |||||||||||  |||| ||||||| | ||      | | || |   |    |  ||| || |    | ||||||| | |     |||   | ||                     
AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgccattatttaaaccctttgtgcattgttgccatgaacttttggagctgctgtttcatctcgttatgtcattattccttaacag

upper sequence: GLYMA17G05530.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G008611_T02 (Zea mays), 5'ss of exon 8
TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGgtttgtttcttttcggaatcagcaggca-tgaaatagtcacttcatttccacatttattcttac----agcttttggtgttttccattctaatggtag---------------------------
 ||||| || || |||||||| ||||| ||||| || ||||| |||||||| |||||||||||  |||| ||||||| | ||  |   |   || |   |    |  ||| || |    | ||||||| | |     |||   | ||                             
AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcaccattttttaaaccctttgtgcattgttgccatgaacttttggagctgctgtttcatctcgttatgtcattattccttaacaggatgctca

upper sequence: GLYMA17G05530.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G008611_T01 (Zea mays), 5'ss of exon 8
TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGgtttgtttcttttcggaatcagcaggca-tgaaatagtcacttcatttccacatttattcttac----agcttttggtgttttccattctaatggtag-------------------
 ||||| || || |||||||| ||||| ||||| || ||||| |||||||| |||||||||||  |||| ||||||| | ||  |   |   || |   |    |  ||| || |    | ||||||| | |     |||   | ||                     
AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcaccattttttaaaccctttgtgcattgttgccatgaacttttggagctgctgtttcatctcgttatgtcattattccttaacag

upper sequence: GLYMA17G05530.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0016g00700.t01 (Vitis vinifera), 5'ss of exon 7
TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGgtttgtttcttttcggaatcagcaggca-tgaaatag--tcacttcatttccacatttattcttacagcttttggtgttttccattctaatggtag-------------------
 ||||| ||||| |||||||||||||| || || ||||| ||||| ||||||||||||||||| ||||| ||||||| | |||||| |  | |||| ||||     ||  | |||     ||||  |  ||    || | ||  |                     
AGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAGgtaatgaaatggctttacttgatttt-gttttgttccttttcatttttcctcattcatgttatgattctgtcattttatcttgtttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193632381|gb|FK584191.1|FK584191
EST:     GTTCCAGGGGATTTGG                         GATGTTTTGGTTCTGTGATTCAATTTATCAGGATGCTCAAAGTGCTATAAA
genomic: GTTCCAGGGGATTTGGgtttgtttct ... ctaatggtagGATGTTTTGGTTCTGTGATTCAATTTATCAGGATGCTCAAAGTGCTATAAA