Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCACTGAAGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGTGGTGCATCTATGATTTTAAGGCCTCAGGACTACCTGATACAGCAGAATTCCATTgtaagtattcaaactttaattttctgaggactagtctggattcctagatttccaaagatattgatttttcaagtcaaagtgagttgcaattgacaatggt...

Basic information

species Glycine max
transcript GLYMA17G05490.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05490.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G22850.1 (Arabidopsis thaliana), 5'ss of exon 7
TGTCACTGAAGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGTGGTGCATCTATGATTTTAAGGCCTCAGGACTACCTGATACAGCAGAATTCCATTgtaagtattcaaactttaa---ttttctgagga--ctagtctggattcctagattt-------ccaaagatattgatttttcaagtcaaagtgagttgcaattgacaatggt--------------------
||||   ||  | ||||||| ||| ||  |||||||||||||||| ||||||||| | || |  |||||||| ||||| |||||||||||     | ||||| | |  ||||   |   |||||  ||||  || || |      ||  |  |       ||  | | | ||| ||||    |    ||   | | |  | ||| |||                     
TGTCGGAGACATATTTCCTCCAGTTAGCTTGAACTTTGCTGGTGGAGCATCTATGTTCTTGAATCCTCAGGATTACCTCATACAGCAGAACAATGTCgtaagcactttaactcgcaaccttttcataggaacctggtttcagaatctgaacctaccttgacctgaaacagtgagtttttttttttctgttcctggta--taacattggcctctgcactctgctttctag

upper sequence: GLYMA17G05490.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0061g01030.t01 (Vitis vinifera), 5'ss of exon 7
TGTCACTGAAGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGTGGTGCATCTATGATTTTAAGGCCTCAGGACTACCTGATACAGCAGAATTCCATTgtaagtattcaaactttaattttctgaggactagtctggattcctagatttc-caaagatattgatttttcaagtcaaagt---gagttgcaattgacaatggt
|||||  |   | ||||||  ||| ||| |||||||||||||||||| |||||||| | |||  ||| ||||||||||  ||||||||||||||||||| ||   |  ||||| |||||| |     |   | |        ||| |||     |||||   || ||    |  || |   ||| ||   |||  |   | 
TGTCAAGGGTATATTTCCTACAGTCAGTTTGAACTTTGCTGGTGGTGTATCTATGAATCTAAAACCTGAGGACTACCTTCTACAGCAGAATTCCATTgtgagatgtttaacttcaattttttcttctc---tttaaccgttaagagttcatttggatatcttttgtttgtattgaaattaagagctgagcttgggaggag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16345079|gb|BI970674.1|BI970674
EST:     CATCTATGATNNNAAGGCCTCAGGACTACCTGATACAGCAGAATTCCATT                         GGTGGTGCAGCAGTGTGGTGTATTGGCTTTCAGAAAATCCAGGGTCAAGGG
genomic: CATCTATGATTTTAAGGCCTCAGGACTACCTGATACAGCAGAATTCCATTgtaagtattc ... catgttacagGGTGGTGCAGCAGTGTGGTGTATTGGCTTTCAGAAAATCCAGGGTCAAGGG