Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGACTTTTGTGATAGCTCATTCTTTGGCAGAGTCTCAAAAGGCTGTTACTGCTGCCACAAATTATAATAATAGGGTTGTTGAATGCCATTTGGCTTCTgtgagtacatttcaacctaaataatgttactcttgtacttactccctaattactatttcttgagtgatatataacctgttagggtacacatttattgaat...

Basic information

species Glycine max
transcript GLYMA17G03990.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G03990.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0077g00690.t01 (Vitis vinifera), 5'ss of exon 7
TGGGACTTTTGTGATAGCTCATTCTTTGGCAGAGTCTCAAAAGGCTGTTACTGCTGCCACAAATTATAATAATAGGGTTGTTGAATGCCATTTGGCTTCTgtgagtac--atttcaacctaaata-atgttactcttgtacttactccctaattactatttcttgagtgatatataacctgttagggtacacatttattgaat-
|||  ||||||| ||||||||||||||||||||||| |||||||| || |||||||| ||||||||||||||  ||||||||||||| |   | ||| |||| |||    | ||   | | | |  |   |  | | ||    |    |||||||||        ||||  |   |     |||      |  ||||||  || 
TGGATCTTTTGTAATAGCTCATTCTTTGGCAGAGTCCCAAAAGGCAGTAACTGCTGCTACAAATTATAATAACCGGGTTGTTGAATGTCGGCTAGCTGCTgtaagtttgaacttttccttgagtggaaaatgatatagtttaaatgatctaattacttgacaagcagtggcactcagatgcttat----tagttttattatatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193642227|gb|FK591975.1|FK591975
EST:     CTGCTGCCACAAATTATAATAATAGGGTTGTTGAATGCCATTTGGCTTCT                         ATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATATCAAAA
genomic: CTGCTGCCACAAATTATAATAATAGGGTTGTTGAATGCCATTTGGCTTCTgtgagtacat ... aattttccagATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATATCAAAA
EST: gi|4396496|gb|AI495493.1|AI495493
EST:     GCCATTTGGCTTCT                         ATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATATCAAAA
genomic: GCCATTTGGCTTCTgtgagtacat ... aattttccagATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATATCAAAA
EST: gi|208046639|gb|GD849139.1|GD849139
EST:     CTGCTGCCACAAATTATAATAATAGGGTTGTTGAATGCCATTTGGCTTCT                         ATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATATCAAAA
genomic: CTGCTGCCACAAATTATAATAATAGGGTTGTTGAATGCCATTTGGCTTCTgtgagtacat ... aattttccagATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATATCAAAA
EST: gi|15203268|gb|BI426036.1|BI426036
EST:     CTGCTGCCACAAATTATAATAATAGGGTTGTTGAATGCCATTTGGCTTCT                         ATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCTATATCAAAA
genomic: CTGCTGCCACAAATTATAATAATAGGGTTGTTGAATGCCATTTGGCTTCTgtgagtacat ... aattttccagATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATATCAAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGGACTTTTGTGATAGCTCATTCTTTGGCAGAGTCTCAAAAGGCTGTTACTGCTGCCACAAATTATAATAATAGGGTTGTTGAATGCCATTTGGCTTCTgtgagtacatttcaacctaaataatgttactcttgtacttactccctaattactatttcttgagtgatatataacctgttagggtacacatttattgaat

- - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC