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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTGCCATTGGTGGAGATGTTTTCCCAGGTTCCACACTTTCTGACCATGTTTTGCGGTTTAACAACATACCACAGgtaaaatttcacttttatcttgggtactgtatataatatctgcaactcattaagaactgcaaatgatttggagtatgtccttttcttgtgaatgatcagtttgtatttacattaaacctcag

Basic information

species Glycine max
transcript GLYMA17G03700.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G03700.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G06650.1 (Arabidopsis thaliana), 5'ss of exon 8
GCATTGCCATTGGTGGAGATGTTTTCCCAGGTTCCACACTTTCTGACCATGTTTTGCGGTTTAACAACATACCACAGgtaaaatttc----acttttat--cttgggtactgtatataatatc----tgcaactcattaagaactgcaaatgatttg----gagtatgtccttttcttgtgaatgatcagtttgtatttacattaaacctcag-------------------------------------------------
||||||| |||||||| ||||| ||||| || || ||  | ||||||||| |  |||||||||||||||| ||||||||| | | |     |||||||    || | | ||   |   |||||    |||  |  ||  |    | | | || ||      ||| | |   |  | |  | |  |  ||  |    ||  |  |     ||||                                                 
GCATTGCTATTGGTGGGGATGTGTTCCCGGGCTCAACTTTATCTGACCATATCCTGCGGTTTAACAACATCCCACAGgtatattcttcttgacttttaaaattttgttgctcactgggatatcctcatgcggcctatccattttttctactgtttaaccatgagaaagctatactgtacttagagg-catctgaccttccctctcttgttcagctagcctctttaactccaaaattttgttttcattttttcaatattgcag

upper sequence: GLYMA17G03700.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0077g00950.t01 (Vitis vinifera), 5'ss of exon 8
GCATTGCCATTGGTGGAGATGTTTTCCCAGGTTCCACACTTTCTGACCATGTTTTGCGGTTTAACAACATACCACAGgtaaaatttcacttttatcttgggtactgtatataatatctgcaactcattaagaactgcaaatgatttggagtatgtccttttcttgtgaatgatcagtttgtatttacattaaacctcag
| ||||| ||||| |||||||| |||||||| || || |||||||| ||||||||||||||||||||||| |||||||||   ||  | | ||      |  | |     | |      || ||    || |  |||     ||||   | ||||   ||| || |       |   ||| |     ||||        
GTATTGCAATTGGAGGAGATGTGTTCCCAGGATCTACTCTTTCTGATCATGTTTTGCGGTTTAACAACATCCCACAGgta---ttctagtgtt--tgcagtcattccccctgagg--cacacctgccaaaaagttgc-----atttt--gcatgtttatttttttttccctccccacttggaaagctatta--------

upper sequence: GLYMA17G03700.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S46_63V6.4 (Physcomitrella patens), 5'ss of exon 7
-----------------------GCATTGCCATTGGTGGAGATGTTTTCCCAGGTTCCACACTTTCTGACCATGTTTTGCGGTTTAACAACATACCACAGgtaaaatttcacttttatcttgggtactgtatataatatctgcaactcattaagaactgcaaatgatttggagtatgtccttttcttgtgaatgatcagtttgtatttacattaaacctcag
                       |||||||||||||||| ||||| |  || || || || ||||| || ||||||||||| || |||||||| |||||||||    | |  || |  || | | | |||||     |||     |||||  || | | ||   |      ||| | |   |   | |||||||   | ||| |||||  | ||  | | | 
TGTTACTGACGGCCTCTACGAAGGCATTGCCATTGGTGGTGATGTCTATCCTGGGTCAACGCTTTCGGATCATGTTTTGCGCTTCAACAACATTCCACAGgta----tccgtttctgact-gcgaattgtatg----atc----gctcatgcagga-tccaggag---ccaagtttat---tacatcgtgaatg--taatttctattttgaatattctttat

upper sequence: GLYMA17G03700.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S35_384V6.2 (Physcomitrella patens), 5'ss of exon 7
-----------------------GCATTGCCATTGGTGGAGATGTTTTCCCAGGTTCCACACTTTCTGACCATGTTTTGCGGTTTAACAACATACCACAGgtaaaattt-cacttttatcttgggtactgtatataatatctgcaactcattaagaactgcaaatgatttggagtatgtccttttcttgtgaatgatcagtttgtatttacattaaacctcag
                       |||| ||||||||||||||||| | ||| || ||||| ||||| || ||||| ||||||||||||||||| ||||||||| ||| | |  |||||  |   || |||  |  |  ||     | | |  |    || || || | ||  | | || | | |  |     ||||| | ||||  | | ||           
TGTTACAGATGGTCTATATGAAGGCATCGCCATTGGTGGAGATGTCTACCCTGGGTCCACGCTTTCAGATCATGTGTTGCGGTTTAACAACATTCCACAGgtagaatctgcttttttaagtgtagttctgc-tgaatcatgcatgagtgaa-atactctccacatcaattcaactttggcatgtaatgcaatatgat-attttgggtgtgcag----------