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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTCTACAGACCGTGAGGTTGCTCTCATGGTACTCATGGCATACCTTTCATATATGCTATCTGAAgtaagaaaattctctgaaactcgacccaccacctttgtagtgtaaaaaattccaatgctaaccaatttatttctttggcag

Basic information

species Glycine max
transcript GLYMA17G02560.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 5'ss of exon 8
GCATTCTACAGACCGTGAGGTTGCTCTCATGGTACTCATGGCATACCTTTCATATATGCTATCTGAAgtaagaaaattctctgaaactcgacccac-cacctttgtagtgtaaa---aaattccaatgctaaccaatttatttctttggcag------
||||||||| |||||||||||||| || ||| | |||||||| |||||||||||||||||  |||| ||  |    | || |||  |   | | |        | |||| | |    | | |   ||  || | | ||| ||| ||||  |       
GCATTCTACTGACCGTGAGGTTGCCCTTATGATGCTCATGGCTTACCTTTCATATATGCTGGCTGAGgtgtgcctctgctttgatgcagtatcaaaatttgcatatagtttcattttatagtttgattttatctactttgtttgtttgatattggcag

upper sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g05590.1 (Oryza sativa), 5'ss of exon 9
GCATTCTACAGACCGTGAGGTTGCTCTCATGGTACTCATGGCATACCTTTCATATATGCTATCTGAAgtaaga------aaattctctgaaactcgacccac-cacctttgtagtgtaaaa--aattccaatgctaaccaatttatttctttggcag----------
 || || || ||| | || |||||| ||||| |||||||||| ||||||||||||||||| ||    || ||       ||| | |  |||  || |   |  || || | |   || |||  | |||  |   | | |||||  || ||  | |            
ACACTCAACTGACAGAGAAGTTGCTATCATGATACTCATGGCGTACCTTTCATATATGCTGTCGATGgtgagtgcctacaaactataagaacttcaaaataagcaactctcttaagtcaaattatttcggacatttatcaattacttcctccgtcccaaaatataag

upper sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G063492_T01 (Zea mays), 5'ss of exon 9
GCATTCTACAGACCGTGAGGTTGCTCTCATGGTACTCATGGCATACCTTTCATATATGCTATCTGAAgtaagaaaattctctgaaactcgacccaccac--ctttgta-gtgtaaaaaattccaa--tgctaaccaatttatttctttggcag---------------
 ||||| || ||  | || ||| || ||||| |||||||||||||||||||||| ||| ||||    |||||   ||      ||  || |  |  ||    || | | || ||   | ||  ||  || | |   || ||| |   |  ||                
ACATTCAACTGATAGAGAAGTTTCTATCATGATACTCATGGCATACCTTTCATACATGATATCAATGgtaagtgcatgaatataagttccaaacgtcataaattagcaagtctacttacttgtaaaatgtttag-gatgtatatgaataccatatggtattgatacta

upper sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0020g01960.t01 (Vitis vinifera), 5'ss of exon 9
GCATTCTACAGACCGTGAGGTTGCTCTCATGGTACTCATGGCATACCTTTCATATATGCTATCTGAAgtaaga--------aaattctctgaaactcgacccaccacctttgtagtgtaaaaaattccaatgctaa---ccaatttatttctttggcag------------------------------
|||||| || || || ||||||||  ||||| |||||||||| |||||||| ||||||||  |||||||||||        || ||    | || ||   ||   |||  |||    |    | ||  | |  | |   ||||  ||      |||                                 
GCATTCGACTGATCGGGAGGTTGCAATCATGATACTCATGGCTTACCTTTCGTATATGCTGGCTGAAgtaagatatcccacaacttgctgggaaatccttccctgacccctgtttgctctttatttatactcttgagccccaaaataagcacatggaccttaattttggaattgttatttgtcttacag