Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAGgtaacttaatagtgttaactgttaatcagtatttctctcctacatggtataaaattgtttatattaatgaatgctacaattttgtaatatgcag

Basic information

species Glycine max
transcript GLYMA16G33380.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G33380.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv17s0000g08170.t01 (Vitis vinifera), 5'ss of exon 6
CTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAA---TTCACCCTACAGTTATTTGCCGAGgtaacttaatagtgttaactgttaatcagtatttctctcctacatggtataaaattgtttatattaatgaatgctacaattttgtaata-tgcag
||||||||||||||||||| || || || ||||| |||||||   ||||||||||||| || || |||||||||     | ||     ||||    |||| |  | |        |  | |||||  |||| || || |||   | | |   ||| |  |||||
CTGGTGAGATGCTTCATGTTGCGGAAGCTTTCATAGACAAAAACTTTCACCCTACAGTCATATGTCGAGgtaacacctcaatg-----tgttgtaaagtactcatatttattggtgatttaaatt--ttattttgatcaatttaaaattgaggtacttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16284063|gb|BI945885.1|BI945885
EST:     TGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAG                         CATATGCCAAAGCTTTGGAGGATGCTATTGCTGTTCTTGACAAAATTGCAA
genomic: TGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAGgtaacttaat ... taatatgcagCATATGCCAAAGCTTTGGAGGATGCTATTGCTGTTCTTGACAAAATTGCAA
EST: gi|12774002|gb|BG238929.1|BG238929
EST:     TGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAG                         CATATGCCAAAGCTTTGGAGGATGCT-TTGCTGTTCTTGACAAAATTGCAA
genomic: TGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAGgtaacttaat ... taatatgcagCATATGCCAAAGCTTTGGAGGATGCTATTGCTGTTCTTGACAAAATTGCAA
EST: gi|16276828|gb|BI942066.1|BI942066
EST:     TGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAG                         CATATGCCAAAGCTTTGGAGGATGCTATTGCTGTTCTTGACAAAATTGCAA
genomic: TGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAGgtaacttaat ... taatatgcagCATATGCCAAAGCTTTGGAGGATGCTATTGCTGTTCTTGACAAAATTGCAA
EST: gi|16278542|gb|BI942959.1|BI942959
EST:     TGTCGCCGATGCATTCATTGACAAAATGCACCCTACAGTTATTTGCCGAG                         CATATGCCAAAGCCTGGGAGGATGCTATTGCTGTTCTTGACAGAATTGC
genomic: TGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAGgtaacttaat ... taatatgcagCATATGCCAAAGCTTTGGAGGATGCTATTGCTGTTCTTGACAAAATTGC
EST: gi|24206236|gb|BU965489.1|BU965489
EST:     TGTCGCGGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAG                         CATATGCCAAAGCTTTGGAGGATGCTATTGCTGTTCTTGACAAAATTGCAA
genomic: TGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAGgtaacttaat ... taatatgcagCATATGCCAAAGCTTTGGAGGATGCTATTGCTGTTCTTGACAAAATTGCAA
EST: gi|162286128|gb|FC456630.1|FC456630
EST:     TGTCGCGGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAG                         CATATGCCAAAGCTTTGGAGGATGCTATTGCTGTTCTTGACAAAATTGCAA
genomic: TGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAGgtaacttaat ... taatatgcagCATATGCCAAAGCTTTGGAGGATGCTATTGCTGTTCTTGACAAAATTGCAA