Sequence
atgc intronic sequence ATGC exonic sequenceGCAGCAGATTTTAATGTTGCAGCAGCTCAACAAGGAATAATTTACATTGATGAAGTTGACAAAATAACGAAGAAGgtttcttttctaatttaattggataagttaatactttcttgttgactatagattttaatgttgttgttatataattacag
Basic information
species | Glycine max |
transcript | GLYMA16G33080.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G33080.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G33360.1 (Arabidopsis thaliana), 5'ss of exon 6
GCAGCAGATTTTAATGTTGCAGCAGCTCAACAAGGAATAATTTACATTGATGAAGTTGACAAAATAACGAAGAAGgtttcttttctaatt----taattggataagttaatactttcttgttgactatagattttaatgttgttg---ttatataattacag
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GTCGCTGAGTTCAACGTGCAAGCAGCACAACAGGGAATAGTCTATATTGATGAAGTTGATAAGATAACTAAGAAGgtcagtatgcaagacatgataacttctgaactcgataagaagaagataattg--ggctttatgcttcctggattctcctttctacag
upper sequence: GLYMA16G33080.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S163_100V6.1 (Physcomitrella patens), 5'ss of exon 6
GCAGCAGATTTTAATGTTGCAGCAGCTCAACAAGGAATAATTTACATTGATGAAGTTGACAAAATAACGAAGAAGgtttctt-ttctaatttaattggataagttaatactttcttgttgactatagattttaatgttgt-tgttatataat---tacag---------------
|| ||||| ||||||||| |||| |||||||| || || |||| |||||||||||||||||||| || |||||||| | || | |||| | | || | || | | | | |||| | | | ||| | | ||| || | | |||
GCGGCAGAATTTAATGTTCCAGCCGCTCAACAGGGTATCGTTTATATTGATGAAGTTGACAAAATTACAAAGAAGgtatgacattttcatttgaattgagacgtcacctcaagtcagagaaatatacacctccaagttctgtattagttagtaccttcagcatagttttctagta
upper sequence: GLYMA16G33080.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S98_222V6.1 (Physcomitrella patens), 5'ss of exon 7
GCAGCAGATTTTAATGTTGCAGCAGCTCAACAAGGAATAATTTACATTGATGAAGTTGACAAAATAACGAAGAAGgt-ttcttttctaatttaattggataagttaatactttcttgttgacta-tagattttaatg-ttgttgttatata--attacag-----------------
| |||||| ||||| || || || || ||||| || ||||||||||||||||| |||||||| || |||||||| ||||||| | || | | | | || | | || |||| | |||| | | ||||| ||| ||| | ||||
GAAGCAGAATTTAACGTACTTGCTGCCCAGCAAGGCATCATTTACATTGATGAAGTGGACAAAATCACAAAGAAGgtattctttttttatccta--gtacgaatttctggctagttcttgattggtagagtagatcaattgtttttagatagcacaacagtgggcaggactcggatgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16276814|gb|BI942058.1|BI942058EST: CTCAACAAGGAATAATTTACATTGATGAAGTTGACAAAATAACGAAGAAG TCCAAGAGCTTAAATATCAGTCGGGATGTTTCTGGTGAGGGTGTTCAGCAG
genomic: CTCAACAAGGAATAATTTACATTGATGAAGTTGACAAAATAACGAAGAAGgtttcttttc ... ataattacagTCCAAGAGCTTAAATATCAGTCGGGATGTTTCTGGTGAGGGTGTTCAGCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAGCAGATTTTAATGTTGCAGCAGCTCAACAAGGAATAATTTACATTGATGAAGTTGACAAAATAACGAAGAAGgtttcttttctaatttaattggataagttaatactttcttgttgactatagattttaatgttgttgttatataattacag
- - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG