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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTATCTTGGGAGTTCTGTGCAAGGTGCCATGAGGAACTTCTTCCTCGAAGGTTGGTTGCACCACAGgtatgattctgcattcttgaatgcttttcacttctgcagccactctttgttttgaatagatgatggggctatttggtagaatatttctgtgaagtagatc...

Basic information

species Glycine max
transcript GLYMA16G32260.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32260.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv16s0100g00500.t01 (Vitis vinifera), 5'ss of exon 5
ATATTATCTTGGGAGTTCTGTGCAAGGTGCCATGAGGAACTTCTTCCTCGAAGGTTGGTTGCACCACAGgta-tgattctgcattcttgaatgcttttcacttctgcagccactctttgttttgaatagatgatggggctatttggtagaatatttctgtgaa-gtagatc
|||||||| ||||| || |||||      |||||| |||||||||||||| |||||||| || ||||||||| |  || ||||||  |   || | | |  |      |    ||| |    |  ||  |  | |  | | | || |  || | |||  |     || || 
ATATTATCCTGGGAATTTTGTGCCCAACACCATGAAGAACTTCTTCCTCGTAGGTTGGTAGCCCCACAGgtactagttttgcatttcttcctg-tctcctttaaattggatgatctataaaatttatgaaataggatgatgtatgttccaaaagttcaattttcatacat-