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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTATCAAAACAAGTTGTCTACTATAAGGGTCATCAAGTACACAATCTCAATGAATTGGAATACATAAATGGTGAAGTCTGGGCAAATGTTTTTATGgtatgtctttttgtgatcaattatgattttagttcgagaaagcatcttttcttccctaaaattctaattttagccatgtatgcatgatgactatggcccaaggttctctgttaggctggattttgtttgaggttgataacttgatatttctttgtgtag

Basic information

species Glycine max
transcript GLYMA16G29760.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G29760.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os06g01410.1 (Oryza sativa), 5'ss of exon 7
TTGTATCAAAACAAGTTGTCTACTATAAGGGTCATCAAGTACACAATCTCAATGAATTGGAATACATAAATGGTGAAGTCTGGGCAAATGTTTT-TATGgtatgtctttttgtgatcaattatgattttagttcgagaaagcatcttttcttccctaaaattctaattttagccatgtatgcatgatgactatggcccaaggttctctgttaggctggattttgtttgaggttgataacttgatatttctttgtgtag
|  |    | |     |||  | ||| | | | || |||| | | |||| |||||| ||||||| ||||| |||||||| ||||||||||| |   | | ||      | ||    |  |  |||   | | | |  |     | |    | | |  ||| | |  || |||  ||  |||    |  | ||       |  ||||| ||         |    |    |||  |||                     
TCATGAAGACAGTGACTGTGAAATATCAAGATAATGAAGTCCCCTATCTTAATGAACTGGAATATATAAACGGTGAAGTATGGGCAAATGTCTGGCAGgttagacagctgtgccccctttgctgacaattgcttgttagttgttatagcttacacgtaaaatttgtttgtagtaatacatgatcaaccaatacaatgtgaa-ttctcagt--attcatttcaaatccatggtatatag--------------------

upper sequence: GLYMA16G29760.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G011893_T01 (Zea mays), 5'ss of exon 7
TTGTATCAAAACAAGTTGTCTACTATAAGGGTCATCAAGTACACAATCTCAATGAATTGGAATACATAAATGGTGAAGTCTGGGCAAATGTTTTTATGgtatgtctttttgtgatcaattatgattttagttcgagaaagcatcttttcttccctaaaattctaattttagccatgta-tgcatgatgactatggcccaaggttctctgttaggctggattttgtttgaggttgataacttgatatttctttgtgtag
|  |   |        |||| | ||| | ||| ||||||| | | |||| |||||  ||||||| ||| |||||||||||||||||||||| |    || |           | | |  | |  ||    | | ||  | ||| | ||  |    |  ||  || | | | | || || ||  |||| |   | || |   |   | || ||| ||  ||                                      
TCATGAAAGTGGTGACTGTCAAGTATCACGGTAATCAAGTCCCCTATCTTAATGAGCTGGAATATATAGATGGTGAAGTCTGGGCAAATGTCT----GGCA-----------Ggttagatgtagttcc--tcctagctaacatatcttactatgaagtatcttagtgt-aactatatagtgtctgatta--gttgctc---gcattatggtagccttcata-------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5606901|gb|AI900999.1|AI900999
EST:     TCAATGAATTGGAATACATAAATGGTGAAGTCTGGGCAAATGTTTTTATG                         ACTGACTGCATTGTAAGAATCTCTCCCCATGATGGCAATGTTCTAGGATGG
genomic: TCAATGAATTGGAATACATAAATGGTGAAGTCTGGGCAAATGTTTTTATGgtatgtcttt ... ctttgtgtagACTGACTGCATTGTAAGAATCTCTCCCCATGATGGCAATGTTCTAGGATGG