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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTATACTGTCGACAAAGTATTACTGGGTAATAGGTGGTTGCGGAAAGCAACAGGCATACAACCAAAATTTCCATATATGGTTGACTCATTTGAGAGAAGgtatatgttatgttgcttcaagcctttgaaactgaaattttcaactcgtgaaattttaacccctgaccttagtccactggtctcctaatcaagtttttca...

Basic information

species Glycine max
transcript GLYMA16G29580.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G29580.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv16s0050g01470.t01 (Vitis vinifera), 5'ss of exon 7
AGTATACTGTCGACAAAGTATTACTGGGTAATAGGTGGTTGCGGAAAGCAACAGGCATACAACCAAAATTTCCATATATGGTTGACTCATTTGAGAGAAGgtatatgttatgttgcttcaagcctttgaaactgaaattttcaactcgtgaaattttaacccctgacc-ttagtccactggtct-cctaatcaagtttttca--
 |||| |||| |||| |||  | ||||| ||  ||||||| || ||||| || ||||| |||||||||||||| || ||||| || || ||||||| |||||| ||  |       | ||    ||| |||      ||  |||| |        ||  |||||  |  ||  ||   ||||    |   || | || || |  
TGTATGCTGTTGACAGAGTGCTGCTGGGGAACCGGTGGTTACGAAAAGCCACTGGCATTCAACCAAAATTTCCTTACATGGTGGATTCGTTTGAGAAAAGgtacatccttaacatgtgcattgatttcaaaagagtgttgccaacacc----gccttgccccctttcaattcatcagatggtggatcctgtctatttcttgata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208241577|gb|GE038237.1|GE038237
EST:     TGACTCATTTGAGAGAAG                         AAGTGAAGCTTCTCTTCTGAGAGCTACAGAGTCAAGCAGCTGCCTTGAGAA
genomic: TGACTCATTTGAGAGAAGgtatatgtta ... aatcctgcagAAGTGAAGCTTCTCTTCTGAGAGCTACAGAGTCAAGCAGCTGCCTTGAGAA
EST: gi|151408975|gb|EV278783.1|EV278783
EST:     ACAGGCATACAACCAAAATTTCCATATATGGTTGACTCATTTGAGAGAAG                         AAGTGAAGCTTCTCTTCTGAGAGCTACAGAGTCAAGCAGCTGCCTTGAGAA
genomic: ACAGGCATACAACCAAAATTTCCATATATGGTTGACTCATTTGAGAGAAGgtatatgtta ... aatcctgcagAAGTGAAGCTTCTCTTCTGAGAGCTACAGAGTCAAGCAGCTGCCTTGAGAA