Sequence
atgc intronic sequence ATGC exonic sequenceGCAATGGTTGCCAGAGGAGATCTTGGCGCTGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAGgtaaacttctttacctctgaaaatctgtagtaaaaataattatcaattggtatcatttatgttgctggatggatgtcatgttgagctcatcttaacatcgtaatggctgttattgtag
Basic information
species | Glycine max |
transcript | GLYMA16G28980.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G28980.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 7
GCAATGGTTGCCAGAGGAGATCTTGGCGCTGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAGgtaaacttctttacctctga--aaatctgtagtaaaaataatta-----tcaattggtatcatttatgttgctggatggatgtcatgttgagctcatcttaacatcgtaatggctgttattgtag
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GCAATGGTTGCTAGAGGGGATCTTGGTGCCGAGCTTCCTATTGAGGAGGTCCCATTGCTACAGgtaa-tttctttgtttctgattgaagagatgatagagataatagggtcttccagaagtgcctttcatgttttataacaagcatctacttgagtatttaccaacatttcaa--actgcag------
upper sequence: GLYMA16G28980.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ08413 (Selaginella moellendorffii), 5'ss of exon 6
GCAATGGTTGCCAGAGGAGATCTTGGCGCTGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAGgtaaacttctttacctctgaaaatctgtagtaaaaataattatcaattggtatcatttatgttgctggatggatgtcatgttgagctcatcttaacatcgtaatggctgttattgtag
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GCTATGGTTGCTAGAGGAGATCTTGGTGCCGAGCTTCCTATTGAAGACGTGCCCCTCCTTCAGgttcg-ttctcgctctctagaaacttaatgtgattcaag-------------------------------------------------------------------------------
upper sequence: GLYMA16G28980.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ15169 (Selaginella moellendorffii), 5'ss of exon 5
GCAATGGTTGCCAGAGGAGATCTTGGCGCTGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAGgtaaacttctttacctctgaaaatctgtagtaaaaataattatcaattg--gtatcatttatgttgctggatggatgtcatgttgagctcatcttaacatcgtaatggctgttattgtag
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GCTATGGTTGCTAGAGGAGATCTTGGTGCCGAGCTTCCTATTGAAGACGTTCCCCTCCTTCAGgttgg-ttctcgctctctagaaacttaatgtgattcaagcttccgttttccgcttggttcgagcag------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23734545|gb|BU765511.1|BU765511EST: GAGGAGATCTTGGCGCTGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAG GAAGAGATAATCAACTTGTGTCGTAGCATGGGAAAGGCTGTTATTGTGGCA
genomic: GAGGAGATCTTGGCGCTGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAGgtaaacttct ... gttattgtagGAAGAGATAATCAACTTGTGTCGTAGCATGGGAAAGGCTGTTATTGTGGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAATGGTTGCCAGAGGAGATCTTGGCGCTGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAGgtaaacttctttacctctgaaaatctgtagtaaaaataattatcaattggtatcatttatgttgctggatggatgtcatgttgagctcatcttaacatcgtaatggctgttattgtag
- - - - - - GAGGAG
- - - - - - - AGGAGA
- - - - - - - GGAGAT
- - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAGG