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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTGATGAACTACAAGTGAACTACAATAATGATCGTTCAAGgtgactcagttggttctttctttatttatttattcattttttaacttaatctcttttataacattgtaatcattattactgagtttactcatatcccacag

Basic information

species Glycine max
transcript GLYMA16G27970.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27970.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0072g00310.t01 (Vitis vinifera), 5'ss of exon 8
CCTTGATGAACTACAAGTGAACTACAATAATGATCGTTCAAGgtgactcagttggttctttctttattta-tttattcattttttaac-----------ttaatctctt-ttataacattgtaatcattat--tactgagtttactcatatcccacag----
|||||||||  |||||||||||||||||||||| || || |||||| |  |||| ||| |||  | |  | ||| |  |  |||  |            | ||| |||  || | || |  |  | | |||  |  ||| || | ||   |      |    
CCTTGATGAGTTACAAGTGAACTACAATAATGAGCGCTCTAGgtgagtt-gttgcttcattcactctgcactttgtatagctttagatggggtcagttgtgaatatctccttttgacctaatcttgactatgctgttgaattaattctctttatgttgatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|61241638|gb|DN591029.1|DN591029
EST:     CCTTGATGAACTACAAGTGAACTACAATAATGATCGTTCAAG                         GGACTTCACAAACCCTAATCTGCCTACAGAGCAGAAAGGTCGATCTTCACA
genomic: CCTTGATGAACTACAAGTGAACTACAATAATGATCGTTCAAGgtgactcagt ... tatcccacagGGACTTCACAAACCCTAATCTGCCTACAGAGCAGAAAGGTCGATCTTCACA
EST: gi|192326435|gb|FK017707.1|FK017707
EST:     CCTTGATGAACTACAAGTGAGCTACAATAATGATCGTTCAAG                         GGACTTCACAAACCCTAATCTGCCTACAGAGCAGAAAGGTCGATCTTCACA
genomic: CCTTGATGAACTACAAGTGAACTACAATAATGATCGTTCAAGgtgactcagt ... tatcccacagGGACTTCACAAACCCTAATCTGCCTACAGAGCAGAAAGGTCGATCTTCACA
EST: gi|9900186|gb|BE609154.1|BE609154
EST:     CCTTGATGAACTACAAGTGAACTACAATAATGATCGTTCAAG                         GGACTTCACAAACCCTAATCTGCCTACAGAGCAGAAAGGTCGATCTTCACA
genomic: CCTTGATGAACTACAAGTGAACTACAATAATGATCGTTCAAGgtgactcagt ... tatcccacagGGACTTCACAAACCCTAATCTGCCTACAGAGCAGAAAGGTCGATCTTCACA