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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGATTGATGTGCCTCTAGATTTTGTAGCCAGAGATGTAATTGAAGACCAGAGTCAATTTGCTCCATCTGAACTATCTATTTCAGGATCATACCCAGAGgtttattccctgctgtgaaaagtgtagtggcacaagtttacaaacttccttcaggaaatttaaattcctaattgttaatgtctctgataaatgatgttaggtacag

Basic information

species Glycine max
transcript GLYMA16G27060.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5770839|gb|AI974013.1|AI974013
EST:     AGAGTCAATTTGCTCCATCTGAACTATCTATTTCAGGATCATACCCAGAG                         GTACAGGATGAACTAGGTGCTCTATACGATAGATACAGAGTTGGATATGCC
genomic: AGAGTCAATTTGCTCCATCTGAACTATCTATTTCAGGATCATACCCAGAGgtttattccc ... ttaggtacagG-A-----TGAACTAGGTGCTCTATACGATAGATACAGAGTTGGATATGCC
EST: gi|298192732|gb|HO033166.1|HO033166
EST:     AGAGTCAATTTGCTCCATCTGAACTATCTATTTCAGGATCATACCTAGAG                         GTACAGGATGAACTAGGTGCTCTATACGATAGATACAGAGTTGGATATGCC
genomic: AGAGTCAATTTGCTCCATCTGAACTATCTATTTCAGGATCATACCCAGAGgtttattccc ... ttaggtacagG-A-----TGAACTAGGTGCTCTATACGATAGATACAGAGTTGGATATGCC