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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAGgtgggtttgtctcatttttttgagattttttttattctcctgttctttcaattcacctgacctgagtccatttttgaaaatctttgcag

Basic information

species Glycine max
transcript GLYMA16G27050.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888883|gb|BQ742096.1|BQ742096
EST:     TTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAG                         ACCCTGAGAGAGGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGA
genomic: TTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAGgtgggtttgt ... atctttgcagACCCTGAGAGAGGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGA
EST: gi|254315172|gb|GR830165.1|GR830165
EST:     TTTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAG                         ACCCTGAGAGAGGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGACGC
genomic: TTTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAGgtgggtttgt ... atctttgcagACCCTGAGAGAGGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGACGC
EST: gi|192324538|gb|FK016789.1|FK016789
EST:     TTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAG                         ACCCTGAGAGAGGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGACGC
genomic: TTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAGgtgggtttgt ... atctttgcagACCCTGAGAGAGGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGACGC
EST: gi|192294341|gb|FG987270.1|FG987270
EST:     TTTCTTTAAAAAAGAAACTGAAAGATAAAATGGGCTGAATTTCAG                         ACCCTGAGAGAGGCCATCCATCAAGAGTATCGCGAGGTGGTTGAAGAGACG
genomic: TT-CTTTAAAAAAGAAACTGAAAGATAAAATGG-CTGAATTTCAGgtgggtttgt ... atctttgcagACCCTGAGAGAGGCCATCCATCAAGAGTATCGCGAGGTGGTTGA-GAGACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAGgtgggtttgtctcatttttttgagattttttttattctcctgttctttcaattcacctgacctgagtccatttttgaaaatctttgcag

- - - -  AAAGAA
- - - - - AAGAAA