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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTATGGTTCTGAAAATCAGCTCAAAGTTTGAACTACGTCGATTTTGCCGGACAACTGGTTCTGTTGCCATGgtttgtgctttttgcttatttggctacgtaaagaggttttctactttttgtctaacccattttattttcatgcaatag

Basic information

species Glycine max
transcript GLYMA16G26920.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26920.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G381744_T01 (Zea mays), 5'ss of exon 7
GCTTATGGTTCTGAAAATCAGCTCAAAGTTTGAACTACGTCGATTTTGCCGGACAACTGGTTCTGTTGCCATGgtttgtgct--ttttgc----ttatttggctacgtaaagaggt----tttcta------ctttttgtctaacccatttta-ttttcatgcaatag----------
||| |||||||||||||||||||| |||||||||||| |  | || ||||| || |||||  ||||||| || ||  || ||  |||| |     ||||||     ||   | |||    ||  ||        || ||   | |  |||||  ||||  ||   | |          
GCTGATGGTTCTGAAAATCAGCTCGAAGTTTGAACTAAGAAGGTTCTGCCGTACTACTGGGGCTGTTGCAATTgtaagttctgattttacagatgtatttgttcctgtgtcgtggtagcattcttaaatacttattctgataatctgattttggtttttgtgtttttgaattatatag

upper sequence: GLYMA16G26920.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G083095_T03 (Zea mays), 5'ss of exon 7
GCTTATGGTTCTGAAAATCAGCTCAAAGTTTGAACTACGTCGATTTTGCCGGACAACTGGTTCTGTTGCCATGgt---ttgtgcttttt---gcttatttggctacgtaaagaggttttctactttttgtctaacccattttattttcatgca-atag
||| |||||||||||||||||||| |||||||||||  |  |||| ||||| || |||||  ||||||| || ||   ||||| ||  |      ||||||    |||      ||     ||| ||    |     ||||| || ||    | ||||
GCTGATGGTTCTGAAAATCAGCTCGAAGTTTGAACTGAGAAGATTCTGCCGTACTACTGGGGCTGTTGCAATTgtaagttgtgattcatcagatgtatttgttaccgtgtcatagtagcacactattctgattttggatttttttctctcaaatatag

upper sequence: GLYMA16G26920.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G03960.1 (Arabidopsis thaliana), 5'ss of exon 7
GCTTATGGTTCTGAAAATCAGCTCAAAGTTTGAACTACGTCGATTTTGCCGGACAACTGGTTCTGTTGCCATGgtttgtgctttt---tgcttatttggctacgta---aagaggttttctactttttgtctaacccattttattttcatgcaatag
| | |||||  |||||||||||||||||||||||||  | || |||||||| ||| | ||  |||| |||   ||  ||| | ||   ||  ||| ||  |  |||   ||| |   || ||   |   | | |  | ||| ||| |||  ||    
GATAATGGTATTGAAAATCAGCTCAAAGTTTGAACTGAGGCGTTTTTGCCGTACAGCGGGGGCTGTCGCCCATgtaagtgttattaattggctatctgaatgagtatctaagggtggttttatcctagcttttaatcctttaattatcaaacag---

upper sequence: GLYMA16G26920.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0007g07460.t01 (Vitis vinifera), 5'ss of exon 7
GCTTATGGTTCTGAAAATCAGCTCAAAGTTTGAACTACGTCGATTTTGCCGGACAACTGGTTCTGTTGCCATGgtttgtgctttttgcttatttggctacgtaaagaggttttctactttttgtctaacccattttattttcatg-caatag
 ||||||||| ||||||||||||||||||||||||| || ||||||||||| ||||||||  |||||||  | ||  |    ||     |   ||  |   | || |  || | || |  ||   ||||    ||  ||    || ||| ||
ACTTATGGTTTTGAAAATCAGCTCAAAGTTTGAACTGCGGCGATTTTGCCGTACAACTGGAGCTGTTGCAGTTgtaagcatattagcactggatg-ttgtttgaaaaa-ttctttaatggtttcataacatgcttatttaatgtgacaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213599562|gb|DB962765.1|DB962765
EST:     CAAAGTTTGAACTACGTCGATTTTGCCGGACAACTGGTTCTGTTGCCATG                         CTAAAACTTGGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCTGTT
genomic: CAAAGTTTGAACTACGTCGATTTTGCCGGACAACTGGTTCTGTTGCCATGgtttgtgctt ... catgcaatagCTAAAACTTGGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCTGTT
EST: gi|193612736|gb|FK561353.1|FK561353
EST:     CAAAGTTTGAACTACGTCGATTTTGCCGGACAACTGGTTCTGTTGCCATG                         CTAAAACTTGGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCTGTT
genomic: CAAAGTTTGAACTACGTCGATTTTGCCGGACAACTGGTTCTGTTGCCATGgtttgtgctt ... catgcaatagCTAAAACTTGGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCTGTT
EST: gi|193323997|gb|FK291745.1|FK291745
EST:     CAAAGTTTGAACTACGTCGATTTTGCCGGACAACTGGTTCTGTTGCCATG                         CTAAAACTTGGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCTGTT
genomic: CAAAGTTTGAACTACGTCGATTTTGCCGGACAACTGGTTCTGTTGCCATGgtttgtgctt ... catgcaatagCTAAAACTTGGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCTGTT
EST: gi|26268510|gb|CA819573.1|CA819573
EST:     CAAAGTTTGAACTACGTCGATTTTGCCGGACAACTGGTTCTGTTGCCATG                         CTAAAACTTGGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCTGTT
genomic: CAAAGTTTGAACTACGTCGATTTTGCCGGACAACTGGTTCTGTTGCCATGgtttgtgctt ... catgcaatagCTAAAACTTGGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCTGTT