Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACATTTTGGAAGCAACTTATCCGGCAGTCGCCAAGAGATTACATGGTGATTGGCTCTCTGATCCTGCAATTGCAATTGTTACAGGCTTCCTTGGAAAGgtatttgttatgtcatgtttttcaatgctttttttcatttcttttcttctccgggattttgtgttcataaaataagaattttctaattagaaattttttgacttgaattcctttttgaag

Basic information

species Glycine max
transcript GLYMA16G26300.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26300.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0244g00140.t01 (Vitis vinifera), 5'ss of exon 6
GGACATTTTGGAAGCAACTTATCCGGCAGTCGCCAAGAGATTACATGGTGATTGGCTCTCTGATCCTGCAATTGCAATTGTTACAGGCTTCCTTGGAAAGgtatttgttatgtcatgtttttcaatgctttttttcatttcttttcttctccgggattttgtgttcataaaat--aagaattttctaattagaaattttttgacttgaattcctttttgaag
 ||||| |||||||||||||| || || || || ||||| ||| ||  ||||||| |   ||||||||||||| | |||||||| || ||||||||||||||   || | ||  | ||||   |||| |||    || |||       ||    || ||| ||  ||| |  |  | |||| |    |||   | | || | | |  |              
AGACATCTTGGAAGCAACTTACCCAGCTGTTGCAAAGAGGTTATATAATGATTGGATTAATGATCCTGCAATTCCCATTGTTACCGGTTTCCTTGGAAAGgttcctgctctg--aagttt---aatggttt----caattcccagtaact---agaatttatgcacatgagttctaggaatat---gatttatattcttctaattgcag-------------