Sequence
atgc intronic sequence ATGC exonic sequenceGCCTTGGAAGAAGATAATGGTTATTGTGGAGGGGATATACAGCATGGAAGGAGAGCTTTGCAAACTTCCAGAGGTCATAGCTGTATGTAAAAAATACAAGgttggtaattatggtagctctatttttattaatgtacaaattgtaattcttttatttatacctgtttcccatgtgcattttttatttttatttttatggg...
Basic information
species | Glycine max |
transcript | GLYMA16G26210.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 5'ss of exon 7
GCCTTGGAAGAAGATAATGGTTATTGTGGAGGGGATATACAGCATGGAAGGAGAGCTTTGCAAACTTCCAGAGGTCATAGCTGTATGTAAAAAATACAAGgttggtaattatggtagctctatttttattaatgtacaaattgtaattct-tttatttatacctgtttcccatgtgcattttttatt---tttatttttatggg-------------------------------------
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ACCTTGGAAAAAGATCATTGTCATTGTTGAGGGTATCTACAGCATGGAAGGCGAGCTGTGCAAACTACCTGAGATCATAGCTGTATGCAAGAAATACAAGgttcgaggaaatttcttctaatttacagtttaagttctgcgcataaagcagcttaattagcttctcaatcaattagcaatctatatgaagtgcaacatcgagagttgaccatgttgaattattctttattctgtaaaatag
upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g70360.1 (Oryza sativa), 5'ss of exon 7
GCCTTGGAAGAAGATAATGGTTATTGTGGAGGGGATATACAGCATGGAAGGAGAGCTTTGCAAACTTCCAGAGGTCATAGCTGTATGTAAAAAATACAAGgttggtaattatggtagctctatttttattaatgtacaaattgt-aattcttttatttatacctgtttcccatgtgcatttt-ttatttttatttttatggg--
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GGCATGGAAGAAGATCCTGGTGATTGTTGAGGGGATATATAGCATGGAAGGGGAGCTATGCAAACTCCCTGAGATCATATCTGTCTGCAAGAAGTACAAGgtt---aattggagaaatta-attccacttactactaaatttctgaattcttcttatgtttcttagtttcattctgaaccatactagtaagaaaagaacagtag
upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g70380.1 (Oryza sativa), 5'ss of exon 7
GCCTTGGAAGAAGATAATGGTTATTGTGGAGGGGATATACAGCATGGAAGGAGAGCTTTGCAAACTTCCAGAGGTCATAGCTGTATGTAAAAAATACAAGgtt-ggtaattatggtagctctatttttattaatgtacaaattgta-attcttttatttatacctgtttcc---catgtgcatttttta-tttttattt-ttatggg------------------------------------------------------------
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GCCGTGGAAGAAGATTATTGTGATTGTTGAGGGAATATATAGCATGGAGGGGGAGCTATGCAAACTCCCTGAGGTTATAGCTGTCTGCAAGAAATATAAGgtttgagaatttcactcaccgacttatgctctttcttcagaccattcgtgtgggcatgtagacctatttactggcatataaaaacttcagctttcacctgctactaaaagagacagatgtttactgagtaattgagtattgactattgtacttaaccttctggatag
upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g70370.1 (Oryza sativa), 5'ss of exon 7
GCCTTGGAAGAAGATAATGGTTATTGTGGAGGGGATATACAGCATGGAAGGAGAGCTTTGCAAACTTCCAGAGGTCATAGCTGTATGTAAAAAATACAAGgttggtaattatggta-gctctatttttattaatgtacaaattgtaattcttt---tatttatacctgtttcccatgtgcatttttta----tttttatttttatggg--------------------------------------------------------------------------------
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GCGATGGAAGAAGATTATTGTGATTGTTGAGGGAATATATAGCATGGAAGGGGAGCTATGCAAACTCCCTGAGATTGTAGCTGTCTGCAAGAAATATAAGgttcaagaatttcttacactgacttcttgtatatgttctttcttcagatcattaagcatgtaaatctttttttaatcaaaagcttgtaaatctgtttactgtcatatacattacttcaacttttatcagctattaaaatcgataaatatttactgagttttgactattgtacttaaatttctggacag
upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G142030_T01 (Zea mays), 5'ss of exon 7
GCCTTGGAAGAAGATAATGGTTATTGTGGAGGGGATATACAGCATGGAAGGAGAGCTTTGCAAACTTCCAGAGGTCATAGCTGTATGTAAAAAATACAAGgt--tggtaattatggtagctctatttttattaatgtacaa-----attgtaattcttttatttatacctgtttcccatgtgcattttttatttttatttttatggg-
|| ||||||||||| || || ||||| ||||| || || ||||||||||| ||||| || ||||| || ||| | |||||||| || || ||||||||||| || |||| | | ||| | ||| ||| ||| | | | || | | | | | ||| | ||||| | || | | |
ACCATGGAAGAAGATCATTGTCATTGTTGAGGGTATCTATAGCATGGAAGGGGAGCTGTGTAAACTCCCTGAGATTATAGCTGTCTGCAAGAAATACAAGgtcttgagaattttctatgaactactattagctgtgtgcaacaaagagggctagtcctctggtctcccataacaagcatattcatttactccttgttctgccaaacag
upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G010202_T01 (Zea mays), 5'ss of exon 7
GCCTTGGAAGAAGATAATGGTTATTGTGGAGGGGATATACAGCATGGAAGGAGAGCTTTGCAAACTTCCAGAGGTCATAGCTGTATGTAAAAAATACAAGgttggtaattatggtagctctatttttattaatgta-caaattgtaattcttttatttatacctgtttcccatgtgcattttttatttttatttttatggg
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GCCATGGAAGAAGATCATTGTAATTGTCGAGGGAATTTATAGCATGGAGGGGGAGCTATGCAAACTCCCTGAGGTTATTTCTGTCTGCAAGAAATACAAGgtttg-agttttttttttgtggtgatgacttgtgtttcgtattaggatcactgtgcatcttaataacggcaataaatattttcctgtgtatgggatgtggg
upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM5G891276_T01 (Zea mays), 5'ss of exon 5
GCCTTGGAAGAAGATAATGGTTATTGTGGAGGGGATATACAGCATGGAAGGAGAGCTTTGCAAACTTCCAGAGGTCATAGCTGTATGTAAAAAATACAAGgttggtaattatggtagctctatttttattaatgtacaaattgtaattcttttatttata-cctgtttcccatgtgcattttttatttttatttttatggg
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ACCATGGAAGAAGATCATTGTCATTGTTGAGGGTATCTATAGCATGGAAGGGGAGCTGTGTAAACTCCCTGAGATTATAGCTGTCTCCAAGAAATACAAGgtct-tcataattttattgtaattaagtttggcacataaattattcttttttgcttctcagtccattgataaccttaactgagtgcaacaaagagggttgg
upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 7
GCCTTGGAAGAAGATAATGGTTATTGTGGAGGGGATATACAGCATGGAAGGAGAGCTTTGCAAACTTCCAGAGGTCATAGCTGTATGTAAAAAATACAAGgttggtaattatggtagctctatttttattaatgtacaaat-tgtaattcttttatttatac-ctgtt-----tcccatgtgcattttttatttttatttttatggg
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ACCTTGGAAGAAGATCATAGTTGTTGTGGAGGGAATATACAGCATGGAAGGGGATCTTTGCAAACTTCCTGAGATAATAGCAATATGTAAAAAATATAAGgttgtgccgagatgtagc-ctctgtaactcagtatgctatcatgttgttctgtgaagttcacactgttaaaaatataatgaacattattagaagtgacctt------
upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ32734 (Selaginella moellendorffii), 5'ss of exon 7
GCCTTGGAAGAAGATAATGGTTATTGTGGAGGGGATATACAGCATGGAAGGAGAGCTTTGCAAACTTCCAGAGGTCATAGCTGTATGTAAAAAATACAAGgttggtaattatggtagctctatttttattaatgtacaaattgtaattcttttatttatacctgtttcccatgtgcattttttatttttatttttatggg
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GCCTTGGAAAAAGATAATTGTTGTCGTGGAAGGGATTTACAGCATGGAGGGGGAGATTTGCAGATTAAAAGAGATAGTGCAAGTCTGCAAAGCCTACAAGgtattttgctctctcaa-tgtcttctaaaaactgttggaatag---------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18730538|gb|BM525934.1|BM525934EST: GAGAGCTTTGCAAACTTCCAGAGGTCATAGCTGTATGTAAAAAATACAAG GCTTATACATATTTGGACGAA
genomic: GAGAGCTTTGCAAACTTCCAGAGGTCATAGCTGTATGTAAAAAATACAAGgttggtaatt ... tgctttatagGCTTATACATATTTGGACGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCTTGGAAGAAGATAATGGTTATTGTGGAGGGGATATACAGCATGGAAGGAGAGCTTTGCAAACTTCCAGAGGTCATAGCTGTATGTAAAAAATACAAGgttggtaattatggtagctctatttttattaatgtacaaattgtaattcttttatttatacctgtttcccatgtgcattttttatttttatttttatggg
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT