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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGACATGGAGCTTATGGTGAATTACTTGACAAACGGTGGCACAGTGAACTAAAAAGCCTCCTAGATCGAGGTTGGGTTGTTGCCTATGCCGATGTTAGgtaggattcacattatttaatggccatatattcaatgcatattcatatggatatttttttattgttaaatttattttctccaaagtcttatcgcttatatgatagttttggtggcctgtttcag

Basic information

species Glycine max
transcript GLYMA16G26000.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26000.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G065665_T01 (Zea mays), 5'ss of exon 7
ATGGACATGGAGCTTATGGTGAATTACTTGACAAACGGTGGCACAGTGAACTAAAAAGCCTCCTAGATCGAGGTTGGGTTGTTGCCTATGCCGATGTTAGgtaggattcacattatttaatggccatatattcaatgcatattcatatggatatttttttattgttaaatttattttctccaaagtcttatcgcttatatgatagttttggtggcctgtttcag
|||||||||| ||||| |||||| | || || ||||| |||| ||||||| ||||||  || || ||||| ||||||||  |||| ||||| ||||||||||| |  |  | |  || |||  || | ||||        |||  |||| | ||    ||   || |  || || ||     || |  | ||       ||     ||| | ||| |       
ATGGACATGGTGCTTACGGTGAAATTCTGGATAAACGTTGGCGCAGTGAATTAAAAACTCTACTGGATCGTGGTTGGGTGATTGCATATGCTGATGTTAGgtatgtctaccctatttcaattacctt-tatt--------attgctatgaa-atgaacttg--gtaagcttcatatt-----aacttctgtcatccgcctggataatttcgaggcat-------

upper sequence: GLYMA16G26000.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0255g00060.t01 (Vitis vinifera), 5'ss of exon 8
ATGGACATGGAGCTTATGGTGAATTACTTGACAAACGGTGGCACAGTGAACTAAAAAGCCTCCTAGATCGAGGTTGGGTTGTTGCCTATGCCGATGTTAGgtaggattcacattatttaatggc-catatattcaat-gcatattcatatggatatttttttattg--ttaaatttatttt---ctccaaagt------------cttatcgctta--tatgatagttttggtggcctgtttcag
|||| ||||||||||||||||| |||||||||||| ||||||   ||||| | |||||||| || ||||| |||||||||||||| ||||| ||||| ||||| | ||| ||  |  |  | |  || ||  |  ||     | |  |    || |  ||    |   | |||||||| ||    |   ||              |||||||||||  |||||| | ||  |||  || | | ||
ATGGCCATGGAGCTTATGGTGAGTTACTTGACAAAAGGTGGCGTGGTGAATTGAAAAGCCTTCTTGATCGTGGTTGGGTTGTTGCTTATGCTGATGTCAGgtatgtttctcagcaaatgctagttcagattcttgatcatgaaattgttctcatttgcttcagataactcaaatttatattatatttttaaacatcatttcactgcttatcgcttaattatgatgggttaagtgctctttcttag