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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTTTTGGCTTATGGAATTCCACAAAACAATGTGAAAAGGGTCTTCCTTCTGTTAAAGgtaaaatctaagagtaatagctttaatagtctattaggatgaaagtcatgaaactatagttaagcctatctgcttttgctgagttgctcaatgtgatgccctatgcag

Basic information

species Glycine max
transcript GLYMA16G25820.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25820.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G66600.1 (Arabidopsis thaliana), 5'ss of exon 7
GCATTTTTGGCTTATGGAATTCCACAAAACAATGTGAAAAGGGTCTTCCTTCTGTTAAAGgtaaaatctaagagtaatagctttaatagtc-tattaggatgaaagtcatgaaactatagttaagcctatctgcttttgctgagttgctcaatgtgatgccctatgcag
|| ||||| |||||||| |||||||| ||||||||||| || ||||| |||||  | ||||||| |   |    |   |     |||  |   | | | |  |   |    | | |     | |   |||| | | || |  | ||  |||                  
GCGTTTTTAGCTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAGgtaacaaacatatcttgcaaggagaatgattacagttgaaccatcatttctagatt----ctgaaattatc-gttctttcacattttttcag-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8285798|gb|BE023357.1|BE023357
EST:     CTTATGGAATTCCACAAAACAATGTGAAAAGGGTCTTCCTTCTGTTAAAG                         GCTGCATATAACATTGGGGGTCATACAATCAGTGCAGACACAATACAGAAC
genomic: CTTATGGAATTCCACAAAACAATGTGAAAAGGGTCTTCCTTCTGTTAAAGgtaaaatcta ... ccctatgcagGCTGCATATAACATTGGGGGTCATACAATCAGTGCAGACACAATACAGAAC