1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATGgtatgcatcacattcattcctgattattttttttcccccttctcaattgccgagatgagttgacatttccatcaatctttcag
species | Glycine max |
transcript | GLYMA16G25600.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG GAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGCEST: gi|23064117|gb|BU578890.1|BU578890
genomic: GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATGgtatgcatca ... aatctttcagGAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGC
EST: TANT-TGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG GAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGCEST: gi|20448522|gb|BQ252646.1|BQ252646
genomic: GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATGgtatgcatca ... aatctttcagGAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGC
EST: GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG GAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGCEST: gi|7924295|gb|AW830321.1|AW830321
genomic: GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATGgtatgcatca ... aatctttcagGAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGC
EST: GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG GAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGCEST: gi|105633676|gb|DW247039.1|DW247039
genomic: GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATGgtatgcatca ... aatctttcagGAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGC
EST: ATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG GAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGCEST: gi|9565806|gb|BE475315.1|BE475315
genomic: ATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATGgtatgcatca ... aatctttcagGAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGC
EST: GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG GAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGC
genomic: GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATGgtatgcatca ... aatctttcagGAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATGgtatgcatcacattcattcctgattattttttttcccccttctcaattgccgagatgagttgacatttccatcaatctttcag
- TCAGCT
- - CAGCTG
- - AGCTGC
- - - - - - - AAGAAG