1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagttttaattttttgggaaaataaattggtccctggtgacttttatatcagaatattttgttttcacaatcaatgtttggctatcctgatgtttagg...
species | Glycine max |
transcript | GLYMA16G25450.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|208062592|gb|GD860697.1|GD860697
genomic: GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|193614819|gb|FK562829.1|FK562829
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|207832751|gb|GD803567.1|GD803567
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|193356193|gb|FK321394.1|FK321394
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCEST: gi|14258923|gb|BG881840.1|BG881840
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGC
EST: TCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTEST: gi|193570275|gb|FK526228.1|FK526228
genomic: TCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCT
EST: TCTTGCATATTCCCATGGTGCTTTCTCGAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|193394019|gb|FK358556.1|FK358556
genomic: TCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCT-AA
EST: CGGCCGGAGGGTCTTGTCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGACTAATCTACCGTATGAAGCAACCAAAAEST: gi|193656727|gb|FK603759.1|FK603759
genomic: CGGCTGGAGGGTCTTG-CATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: GGGTCGTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|193690033|gb|FK634064.1|FK634064
genomic: GGGTC-TTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|208332947|gb|GE130360.1|GE130360
genomic: GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|208249868|gb|GE048711.1|GE048711
genomic: GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: AGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|207684739|gb|GD666714.1|GD666714
genomic: AGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|193547846|gb|FK504679.1|FK504679
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: GGGTCTTGCATATTCCCATGGTGCTTCCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|208030678|gb|GD831166.1|GD831166
genomic: GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: GCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|193650388|gb|FK598115.1|FK598115
genomic: GCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|193705794|gb|FK643604.1|FK643604
genomic: GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: CATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|207782140|gb|GD753711.1|GD753711
genomic: CATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: CGGCTGGGGGGTCTTGTCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|207788728|gb|GD761644.1|GD761644
genomic: CGGCTGGAGGGTCTTG-CATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|193494312|gb|FK462752.1|FK462752
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|254320724|gb|GR827173.1|GR827173
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: TCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|193598761|gb|FK554129.1|FK554129
genomic: TCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: CTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|208332302|gb|GE126523.1|GE126523
genomic: CTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|208122006|gb|GD917643.1|GD917643
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAATCTAAAEST: gi|208074510|gb|GD868231.1|GD868231
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: CCCATACGGCCGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|193311605|gb|FK275515.1|FK275515
genomic: CCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: TCCCCATACGGCCGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|208023460|gb|GD821680.1|GD821680
genomic: TCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|193570425|gb|FK525370.1|FK525370
genomic: GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: CGGCTGGGGGGTCGTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|207779717|gb|GD752549.1|GD752549
genomic: CGGCTGGAGGGTC-TTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|193706474|gb|FK646714.1|FK646714
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|193410389|gb|FK380240.1|FK380240
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|193401050|gb|FK370105.1|FK370105
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|208111655|gb|GD911921.1|GD911921
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: CCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAEST: gi|193497917|gb|FK458713.1|FK458713
genomic: CCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: GGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagttttaattttttgggaaaataaattggtccctggtgacttttatatcagaatattttgttttcacaatcaatgtttggctatcctgatgtttagg
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG