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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGgtaaactttttagaagtacacttttcacccttgcactgaattaagtatgaaggtgaaaagagtactttaaccagtttctcaaaacagatgatcttttgaaactttctttcaggaaattcttgtccaactgaatactatatgagttttcttatttgatgggagcttctcag

Basic information

species Glycine max
transcript GLYMA16G25380.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193496679|gb|FK462405.1|FK462405
EST:     TTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTG                         ATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT
genomic: TTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGgtaaactttt ... agcttctcagATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT
EST: gi|193497482|gb|FK458306.1|FK458306
EST:     GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTG                         ATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT
genomic: GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGgtaaactttt ... agcttctcagATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT
EST: gi|208297974|gb|GE093231.1|GE093231
EST:     GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTG                         ATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT
genomic: GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGgtaaactttt ... agcttctcagATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT
EST: gi|193456502|gb|FK421806.1|FK421806
EST:     TGAGGTCATTGATAATCTG                         ATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT
genomic: TGAGGTCATTGATAATCTGgtaaactttt ... agcttctcagATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT
EST: gi|192321595|gb|FK013939.1|FK013939
EST:     GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATTTG                         ATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT
genomic: GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGgtaaactttt ... agcttctcagATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT
EST: gi|193583802|gb|FK543786.1|FK543786
EST:     TGAGGTCATTGATAATCTG                         ATTGAC-AGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT
genomic: TGAGGTCATTGATAATCTGgtaaactttt ... agcttctcagATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT
EST: gi|192321596|gb|FK013940.1|FK013940
EST:     GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTG                         ATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT
genomic: GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGgtaaactttt ... agcttctcagATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGgtaaactttttagaagtacacttttcacccttgcactgaattaagtatgaaggtgaaaagagtactttaaccagtttctcaaaacagatgatcttttgaaactttctttcaggaaattcttgtccaactgaatactatatgagttttcttatttgatgggagcttctcag

- - - - - - - - -  CAGATG