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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGAAGGCCACCCTTTGTGTCCATCCTGACAAGTTGCAGCAACGTGGAGCAAGTATTCAACACAAATACATATGTGAGAAAGTCTTTGATCTCCTAAAGgtatgtcttgcatggcatctttcagttaatttatttatttgaaccgtctgcatagggatatttgccagagcaaaccataatgctgttgcataacttaaaa...

Basic information

species Glycine max
transcript GLYMA16G25150.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25150.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G438895_T01 (Zea mays), 5'ss of exon 9
CAGGAAGGCCACCCTTTGTGTCCATCCTGACAAGTTGCAGCAACGTGGAGCAAGTATTCAACACAAATACATATGTGAGAAAGTCTTTGATCTCCTAAAGgtatgtcttgcatggcatctttcagttaatttatttatttgaaccgtctgcatagggatatttgccagagcaaaccataatgctgttgcataacttaaaa
||||||||| ||||| ||||||||||| || ||  | |||||  | || || |  ||   ||| ||||||||||||||||| || |||||||| || |||||||||   ||   |      |    |  | |  ||||||| |   |     |  |   |  |||    || | |  |  ||| |               
CAGGAAGGCAACCCTATGTGTCCATCCAGATAAACTACAGCAGAGGGGCGCTACGATCAGACAGAAATACATATGTGAGAAGGTTTTTGATCTTCTTAAGgtatgt---gctctgtccacattgaatgctctggttatttggaagttggatctctgctcacctgct---gccacctgttttgcag---------------

upper sequence: GLYMA16G25150.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 7
CAGGAAGGCCACCCTTTGTGTCCATCCTGACAAGTTGCAGCAACGTGGAGCAAGTATTCAACACAAATACATATGTGAGAAAGTCTTTGATCTCCTAAAGgtatgtctt--gcatggcat---ctttcagttaatttatttatt-tgaaccgtctgcatagggatatttgccagagcaaaccataatgctgttgcataacttaaaa-
 || || ||||| |||||||| ||||||||||| || || ||| | || ||||| |||||||| || ||||||||||| || || |||||||| |||||||| ||||    |  || |||   |||||    |||| |||| |  | ||  ||||  |||   | | ||   | | |        ||||   |  |   ||  ||| 
TAGAAAAGCCACTCTTTGTGTTCATCCTGACAAATTACAACAAAGGGGTGCAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAGgtgtgtcaccagtctgccattttctttcccaaaattgatttctgattaaatgtcta-atacttacactt---aaaactg-tttccatgcc--tataggcctctaaac