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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTTCTTTTTAAATCAACCAAAGAAGATTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaagtcttgatttttgtggtcaatttctttctttttcttttcttccattttttgtttcaggcttgttctcctatttcttcagttgagttatcaggcatgctcttgccatttttatttgagatttgtttttctctatctttgaaaaaaaatgcag

Basic information

species Glycine max
transcript GLYMA16G23870.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23870.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g03410.2 (Oryza sativa), 5'ss of exon 5
AATTTTCTTTTTAAATCAACCAAAGAAGATTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaagtcttgatttttgtggtcaatttctttctttttcttttcttccattttttgtttcaggcttgtt-----ctcctatttcttcagttgagttatcaggcatgctcttgccatttttatttgagatttgtttttctctatctttgaaaaaaaatgcag
|| || ||||| ||||||||||| || || |||||||||||||| || ||||||||| ||||||| ||||||||||| |||      |  ||  ||  ||| || | |  | | |  ||  | | | |||||| || ||| ||| |  |||       |    |  ||| ||||| | | ||   |  | || |    | | |                                          
AACTTCCTTTTCAAATCAACCAAGGAGGACTCACCTTTAAAGGCAACAGATTTTGGTCTGTCAGACTTCATAAAACCAGgtattt--atttcaagagcttt-tgcttatgtgcatctttgctatgtgcttccaattgttgcttctgatttgagtaggacatacaagtctgcagttcattcatt--gttttctttcattactgtag----------------------------------------

upper sequence: GLYMA16G23870.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G053868_T02 (Zea mays), 5'ss of exon 5
AATTTTCTTTTTAAATCAACCAAAGAAGATTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaagtcttgatttttgtggtcaatttctttctttttcttttcttccattttttgtttcaggcttgttctcctatttcttcagttgagttatcaggcatgctcttgccatttttatttgagatttgtttttctctatctttgaaaaaaaatgcag
|| || ||||| ||||| | ||| || ||||||||  ||||||| || ||||||||||||||||||||||| || || |||         |||      ||| || ||       |||   ||| |        |  | |   || |  ||   |     |       |||   | | | ||||||| | |                                                 
AACTTCCTTTTCAAATCGAACAAGGAGGATTCACCACTAAAGGCGACAGATTTTGGTTTGTCAGATTTCATTAAGCCAGgta--------tcta----cttggggcca-------tctgaatctgtcgggaatctgataggggcaagtctgcagtttagctgaccattttgttgtctaatgcatgctttag-------------------------------------------------

upper sequence: GLYMA16G23870.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0023g03420.t01 (Vitis vinifera), 5'ss of exon 5
AATTTTCTTTTTAAATCAACCAAAGAAGATTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaagtcttgatttttgtggtcaatttctttctttttcttttcttccattttttgtttcaggcttgttctcctatttcttcagttgagttatcaggcatgctcttgccatttttatttgagatttgtttttctctatctttgaaaaaaaatgcag
||||||||||| || ||||||||||| || || ||||| |||||||| ||||||||| | ||||| |||||||| |||||| || |||| | | |  ||      ||||| | |    |||        ||||| ||||        | ||   | || ||  |  |    | |||  |   |||||  |  | |||  ||| || |           ||   | |||| ||| |     
AATTTTCTTTTCAAGTCAACCAAAGAGGACTCGCCTTTGAAGGCCACGGATTTTGGTCTATCAGACTTCATAAAGCCTGgtaagtgaaa-tttcgccttc-----tcaatatatggactttga----aatccatatttt--------catgggtttctgttgttcaaac--aattacaacatatgcttctagcttttgaattggaaaaa---------ctgaatatgaataaacacag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193524793|gb|FK482328.1|FK482328
EST:     TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTG                         GAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
genomic: TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaa ... aaaaatgcagGAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
EST: gi|193473081|gb|FK436670.1|FK436670
EST:     TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTG                         GAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
genomic: TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaa ... aaaaatgcagGAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
EST: gi|193496517|gb|FK460703.1|FK460703
EST:     TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTG                         G-AAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
genomic: TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaa ... aaaaatgcagGAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
EST: gi|193668943|gb|FK612271.1|FK612271
EST:     TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTG                         GAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
genomic: TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaa ... aaaaatgcagGAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
EST: gi|208080484|gb|GD878996.1|GD878996
EST:     TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTG                         GAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
genomic: TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaa ... aaaaatgcagGAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
EST: gi|193451498|gb|FK417946.1|FK417946
EST:     TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTG                         GAAAAAAGTTTACATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAA
genomic: TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaa ... aaaaatgcagGAAAAAAGTTT-CATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAA
EST: gi|193661924|gb|FK606938.1|FK606938
EST:     TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTG                         GAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
genomic: TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaa ... aaaaatgcagGAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
EST: gi|193569503|gb|FK523118.1|FK523118
EST:     TTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCAATAAAACCTG                         GAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
genomic: TTTAAAGGCCACTGATTTTGGTTTGTCAGATTTC-ATAAAACCTGgtgagggaaa ... aaaaatgcagGAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
EST: gi|193477388|gb|FK443525.1|FK443525
EST:     TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTG                         GAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
genomic: TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaa ... aaaaatgcagGAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
EST: gi|208072384|gb|GD872738.1|GD872738
EST:     CCACTGATTTTGGTTTGTCAGATTTCATAAAACCTG                         GAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
genomic: CCACTGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaa ... aaaaatgcagGAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
EST: gi|193674208|gb|FK617300.1|FK617300
EST:     TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTG                         GAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
genomic: TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaa ... aaaaatgcagGAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
EST: gi|208335276|gb|GE135895.1|GE135895
EST:     TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTG                         GAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
genomic: TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaa ... aaaaatgcagGAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
EST: gi|208035511|gb|GD837255.1|GD837255
EST:     TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCGGATTTCATAAAACCTG                         GAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG
genomic: TTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaa ... aaaaatgcagGAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAG