1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAGGCCCTTGCAATGTCTATGGATGATCCCACAATTAACCACGACATGAGAGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCTGAGTTGGCTCTAGgtgagtttttatgcttaatcattctgtatttgaacatgtgtggatgctttctcatttatgttggttgatgattgatctggttctggaattgagaaaaatt...
species | Glycine max |
transcript | GLYMA16G23590.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCTGAGTTGGCTCTAG CTCTCCAATTGTCTGTAGAAGACAGCTCAAAGGACTCGGCAAGEST: gi|192323832|gb|FK018598.1|FK018598
genomic: AGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCTGAGTTGGCTCTAGgtgagttttt ... tcgcttgaagCTCTCCAATTGTCTGTAGAAGACAGCTCAAAGGACTCGGCAAG
EST: AGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCTGAGTTGGCTCTAG CTCTCCAATTGTCTGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTGEST: gi|22933789|gb|BU550928.1|BU550928
genomic: AGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCTGAGTTGGCTCTAGgtgagttttt ... tcgcttgaagCTCTCCAATTGTCTGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTG
EST: AGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCTGAGTTGGCTCTAG CTCTCCAATTGTCTGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTGEST: gi|21675640|gb|BQ627991.1|BQ627991
genomic: AGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCTGAGTTGGCTCTAGgtgagttttt ... tcgcttgaagCTCTCCAATTGTCTGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTG
EST: TGAAGATCCTGAGTTGGCTCTAG CTCTCCAATTGTCTGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTG
genomic: TGAAGATCCTGAGTTGGCTCTAGgtgagttttt ... tcgcttgaagCTCTCCAATTGTCTGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGCCCTTGCAATGTCTATGGATGATCCCACAATTAACCACGACATGAGAGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCTGAGTTGGCTCTAGgtgagtttttatgcttaatcattctgtatttgaacatgtgtggatgctttctcatttatgttggttgatgattgatctggttctggaattgagaaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaaaa