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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGGAATATGGCACAGCTGATGGAAAGTATTCTGCTTCCTATATCACTGGGAAGCTATGTGATGTTGCAGAGGCATATTCAAATGATGAAACTGTTAAGgtatttatctaattccaattattttgttttgtattagtgaaatccaacattttactgataagaagaggggaaaagttatcaaattaacttgctaccaatt...

Basic information

species Glycine max
transcript GLYMA16G20260.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G20260.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G146697_T03 (Zea mays), 5'ss of exon 8
GGGGGAATATGGCACAGCTGATGGAAAGTATTCTGCTTCCTATATCACTGGGAAGCTATGTGATGTTGCAGAGGCATATTCAAATGATGAAACTGTTAAGgtatttatctaa---ttccaat-tattttgttttgtattagtgaaatccaacattttactgataagaagaggggaaaagttatcaaattaacttgctaccaatt
|||||||||||| ||||| |||||||| ||||| ||||| ||||| | ||||||| | |||||||| ||||||||  |    | |||||| ||||| |||||||  || |     ||  | | ||  |  | ||  ||| || |  | |       | || ||||       |  | |  |    || ||  |  | |    ||
GGGGGAATATGGAACAGCAGATGGAAAATATTCAGCTTCTTATATTATTGGGAAGTTGTGTGATGTGGCAGAGGCCCACCTCACTGATGACACTGTCAAGgtatgcattttgactttgtagtgtagctcatgtttcattggtcatttgccttggcctccttataaccttcatgctata--tgctgaaata--tgacaataggtt

upper sequence: GLYMA16G20260.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G031352_T01 (Zea mays), 5'ss of exon 7
GGGGGAATATGGCACAGCTGATGGAAAGTATTCTGCTTCCTATATCACTGGGAAGCTATGTGATGTTGCAGAGGCATATTCAAATGATGAAACTGTTAAGgtatttatcta-attccaat---tattttgttttgtattagtgaaatccaacattttactgataagaagaggggaaaagttatcaaattaacttgctaccaatt
|||||||||||| ||||| ||||||||  |||| ||||| ||||| | ||||||  | |||||||| ||||||||  |    | |||||| ||||| ||||||| | | |  | |  |     | |||  ||    |     |    |  | |  || |       | |  |  | | | ||  |  ||  || | ||  |  |
GGGGGAATATGGAACAGCAGATGGAAAACATTCGGCTTCTTATATTATTGGGAAATTGTGTGATGTGGCAGAGGCCCACCTCACTGATGACACTGTCAAGgtatgtttttgtagtgtagcccatgtttcattgaccaccttggcctccttataacttgcatgctctatgctgaaatacggtaataggtt--ctagtta--agct

upper sequence: GLYMA16G20260.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G31730.1 (Arabidopsis thaliana), 5'ss of exon 7
GGGGGAATATGGCACAGCTGATGGAAAGTATTCTGCTTCCTATATCACTGGGAAGCTATGTGATGTTGCAGAGGCATATTCAAATGATGAAACTGTTAAGgtatttatctaattccaattattttgttttgtattagtgaaatccaacattttactgataagaagaggggaaaagttatcaaattaacttgctaccaatt-
||| |||||||||||||||||||| || |||||||| |||||||| | ||| ||||| || ||||| ||||| ||||| |||| |||||||||||| ||||||| | |  |  |   |  || || ||     | |      |       ||  ||| |  |              | |    |  | || ||   ||   
GGGAGAATATGGCACAGCTGATGGGAAATATTCTGCCTCCTATATTAGTGGAAAGCTGTGCGATGTGGCAGATGCATACTCAAGTGATGAAACTGTAAAGgtatctcttcagcttttaa-atattattcaccgtgaaaacctttacgtgcttagctgttctggtcttttagttctgtgtatgctgtagtttcttgtaacac

upper sequence: GLYMA16G20260.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv02s0087g00690.t01 (Vitis vinifera), 5'ss of exon 8
GGGGGAATATGGCACAGCTGATGGAAAGTATTCTGCTTCCTATATCACTGGGAAGCTATGTGATGTTGCAGAGGCATATTCAAATGATGAAACTGTTAAGgtatttatctaattccaattattttgt-tttgtattagtgaaatccaacattttactgataagaagaggggaaaagttatcaaattaacttgctaccaatt-
||| || ||||| || || | |||||||||||||||||||||||||||||| ||| |||||||||| ||||||||  ||||||   |||| ||||||||||||||  ||    |  |    |||||| |||| ||| ||    || |   ||||| || | |    ||   |    | ||    |    || |||   | | 
GGGTGAGTATGGAACTGCGGGTGGAAAGTATTCTGCTTCCTATATCACTGGAAAGTTATGTGATGTGGCAGAGGCCCATTCAAGCAATGACACTGTTAAGgtattcctcagcctttatgagttttgtgtttgcattggttttgtc-aggtttttattggtcaaccaagtttagttat-atggtttggtttttctagttactg