Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAGACAACATGGGCTCTAACAGTTCTTGGTTACTTGGCAAAATATGTTTTGGGAATTTTAGGgtaagctataatgtatgatgcataatgaataatgatgctttgaactgttgcacatagttttacaaagattgcttactttaacaggtgttatgtttcttatctaacctaacatttgaaaattgtaacag

Basic information

species Glycine max
transcript GLYMA16G19230.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 8
GCTGAGACAACATGGGCTCTAACAGTTCTTGGTTACTTGGCAAAATATGTTTTGGGAATTTTAGGgtaagctataatgtatgatgcataa--tgaataatgatgctttgaactgttgcacatagttttacaaagattgcttactttaacaggtgttatgtttcttatctaacctaacatttgaaaattgtaacag
|||||||| ||||||||| | || || ||||| ||||||||||||  ||| ||||| |||||||||| || | || |   ||||   | |  |||| | | |     | | |            ||||||||   |||      || |||  | ||   |||  |||  ||                        
GCTGAGACTACATGGGCTTTGACTGTCCTTGGCTACTTGGCAAAACTTGTGTTGGGTATTTTAGGgtgag-tgtagttgttgatatttcacatgaaaacttaaaaagtaatcctcaaagttggtttttacaatagttg------ttcacaattatt-cattttctattcaatt----------------------