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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACCAATTTGCACTTCAGAGGAGCAAGGGTTTTTGCTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAATgtaagggactttgataatttccaacttttgtctttgactagagtaagttttttaattcacttactgaaacttgtaactgcag

Basic information

species Glycine max
transcript GLYMA16G17190.3
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16346702|gb|BI972297.1|BI972297
EST:     CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAAT                         GCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
genomic: CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAATgtaagggact ... gtaactgcagGCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
EST: gi|151410996|gb|EV280811.1|EV280811
EST:     GGAATGAAAAATGCTCAAAAT                         GCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
genomic: GGAATGAAAAATGCTCAAAATgtaagggact ... gtaactgcagGCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
EST: gi|19053982|gb|BM732649.1|BM732649
EST:     CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAAT                         GCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
genomic: CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAATgtaagggact ... gtaactgcagGCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
EST: gi|6567013|gb|AW234640.1|AW234640
EST:     CTGTGGTCGTTGACGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAAT                         GCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTTAATGGC
genomic: CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAATgtaagggact ... gtaactgcagGCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
EST: gi|21675217|gb|BQ627568.1|BQ627568
EST:     CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAAT                         GCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
genomic: CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAATgtaagggact ... gtaactgcagGCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
EST: gi|14011702|gb|BG726624.1|BG726624
EST:     CTGTGGTCTTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAAT                         GCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
genomic: CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAATgtaagggact ... gtaactgcagGCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
EST: gi|298194576|gb|HO043048.1|HO043048
EST:     CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAAT                         GCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
genomic: CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAATgtaagggact ... gtaactgcagGCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
EST: gi|19935349|gb|BQ080379.1|BQ080379
EST:     CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAAT                         GCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
genomic: CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAATgtaagggact ... gtaactgcagGCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
EST: gi|17519199|gb|BM188241.1|BM188241
EST:     CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAAT                         GCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
genomic: CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAATgtaagggact ... gtaactgcagGCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAACCAATTTGCACTTCAGAGGAGCAAGGGTTTTTGCTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAATgtaagggactttgataatttccaacttttgtctttgactagagtaagttttttaattcacttactgaaacttgtaactgcag

- - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA