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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTATCCAGGGGTTGCCAAAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGgtaaggaacaatagttcaacttcaagaaaaaatttgatgttgccagataaagcttatatgaagcatgctattcatgtctcggggtgctgaaaagtttttc...

Basic information

species Glycine max
transcript GLYMA16G10880.3
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26269443|gb|CA820506.1|CA820506
EST:     AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAG                         AGAATGGCCTGCTGATAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
genomic: AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGgtaaggaaca ... tgattaatagAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
EST: gi|23064172|gb|BU578945.1|BU578945
EST:     AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAG                         AGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
genomic: AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGgtaaggaaca ... tgattaatagAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
EST: gi|120491370|gb|EH219537.1|EH219537
EST:     AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAG                         AGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
genomic: AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGgtaaggaaca ... tgattaatagAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
EST: gi|22522877|gb|BU081688.1|BU081688
EST:     AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAG                         AGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
genomic: AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGgtaaggaaca ... tgattaatagAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
EST: gi|120495789|gb|EH223956.1|EH223956
EST:     AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAG                         AGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTTGCTGATGCATTAA
genomic: AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGgtaaggaaca ... tgattaatagAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTT-GCTGATGCATTAA
EST: gi|120497234|gb|EH225401.1|EH225401
EST:     AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAA                         AGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
genomic: AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGgtaaggaaca ... tgattaatagAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
EST: gi|22524610|gb|BU083421.1|BU083421
EST:     AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAG                         AGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTANA
genomic: AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGgtaaggaaca ... tgattaatagAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
EST: gi|17962913|gb|BM269669.1|BM269669
EST:     AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAG                         AGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
genomic: AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGgtaaggaaca ... tgattaatagAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
EST: gi|10844582|gb|BF067838.1|BF067838
EST:     AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAG                         AGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
genomic: AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGgtaaggaaca ... tgattaatagAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
EST: gi|10844694|gb|BF070942.1|BF070942
EST:     AAGGTTGCTCTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAG                         AGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
genomic: AGGGT-GCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGgtaaggaaca ... tgattaatagAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
EST: gi|15288120|gb|BI472011.1|BI472011
EST:     AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAG                         AGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
genomic: AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGgtaaggaaca ... tgattaatagAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
EST: gi|9204784|gb|BE331008.1|BE331008
EST:     AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAG                         AGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
genomic: AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGgtaaggaaca ... tgattaatagAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
EST: gi|22523177|gb|BU081988.1|BU081988
EST:     AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAG                         AGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
genomic: AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGgtaaggaaca ... tgattaatagAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
EST: gi|8670132|gb|BE191239.1|BE191239
EST:     GCACTTACGAATATCCTTTTAACTGGATCAGGAGGTGCTTTCAT                         AGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
genomic: GCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGgtaaggaaca ... tgattaatagAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
EST: gi|20811436|gb|BQ295914.1|BQ295914
EST:     AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAG                         AGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
genomic: AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGgtaaggaaca ... tgattaatagAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
EST: gi|9205303|gb|BE331527.1|BE331527
EST:     AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAG                         AGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
genomic: AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGgtaaggaaca ... tgattaatagAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
EST: gi|8670124|gb|BE191231.1|BE191231
EST:     GCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAG                         AGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
genomic: GCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGgtaaggaaca ... tgattaatagAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAA
EST: gi|20813349|gb|BQ297827.1|BQ297827
EST:     AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAG                         AGAATGGNCTGCTNGAAA-GATGAAAGATAT
genomic: AAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGgtaaggaaca ... tgattaatagAGAATGGCCTGCT-GAAAAGATGAAAGATAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTATCCAGGGGTTGCCAAAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGgtaaggaacaatagttcaacttcaagaaaaaatttgatgttgccagataaagcttatatgaagcatgctattcatgtctcggggtgctgaaaagtttttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaaa