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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACTAGTAACGGGAGAGAAGACACTTCCAGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAGgtagtgctacattttgctttttgtgttgaatggtttgctttgaagccaagtggaccaaaaatccctttaagctataaaatatttagtccacttgaaaatt...

Basic information

species Glycine max
transcript GLYMA16G09430.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G09430.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G079452_T02 (Zea mays), 5'ss of exon 7
CCACTAGTAACGGGAGAGAAGACACTTCCAGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAGgtagtgct---acattttgctttttgtgttgaatggtttgctttgaagccaagtggaccaaaaatccctttaagctataaaatatttagtccacttgaaaatt
  |   ||| | ||  | ||| |||  ||||| |||||||| ||||| ||||||||||| ||||||||| || |   |   |||| ||| |       ||    |  |||         ||    |    |  ||||  |     || | | | |      || ||   
GGAAGTGTATCTGGCCACAAGCCACGGCCAGTCCGCCCTGGAATGTTCCTTGAGACTGTTTCCAAGgtattgatctcattctttgttttgtacaacacattcactattttttttttgcatgacatagtgttttctttttgtctgcaattttgtcgcatggctgtaag--

upper sequence: GLYMA16G09430.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0333g00020.t01 (Vitis vinifera), 5'ss of exon 7
CCACTAGTAACGGGAGAGAAGACACTTCCAGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAGgtagtgctacattttgctttttgt--gttgaatggtttgctttgaagccaagtggaccaaaaatccctttaagctataaaatatttagtccacttgaaaatt--
 ||   ||||| |||   ||  | ||||| |||||||||||||||||||||||||||||||||||||||   ||   ||    ||  | |   || || |  | | |    |      |  |    |  |  ||| | | | |   |     | |  | | | | |||  
TCAAGTGTAACAGGACGAAAACCTCTTCCTGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAGgta-cactcatttccatttgctattaattcaaagagtggttactgaatggtttcaagtccagttgacttgaggttgtgccaag---aatggattggtatattgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301426|gb|FG994078.1|FG994078
EST:     AGAAGACACTTCCAGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAG                         GTCTTGTCTGGTTTATATGCTGGAACAGATTCTGGCATCACTGCACAACAT
genomic: AGAAGACACTTCCAGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAGgtagtgctac ... gtcttaccagGTCTTGTCTGGTTTATATGCTGGAACAGATTCTGGCATCACTGCACAACAT
EST: gi|192301425|gb|FG994077.1|FG994077
EST:     AGAAGACACTTCCAGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAG                         GTCTTGTCTGGTTTATATGCTGGAACAGATTCTGGCATCACTGCACAACAT
genomic: AGAAGACACTTCCAGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAGgtagtgctac ... gtcttaccagGTCTTGTCTGGTTTATATGCTGGAACAGATTCTGGCATCACTGCACAACAT