Sequence
atgc intronic sequence ATGC exonic sequenceGAATCTACCCCCAGAAAAAATCTTGTTGAGGTGGATGAATTTCCATTTGAAAAAAGCAGGGTACAAGAAGATTGTCACTAATTTCTCCTCTGATGTGAAGgtaattgagttcttaatttggtgaaaagtaaatgtacttatattctatcatttgctttggacaactagaatcactgttcattcagtactatctcaatgca...
Basic information
species | Glycine max |
transcript | GLYMA16G09360.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G09360.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S314_45V6.1 (Physcomitrella patens), 5'ss of exon 7
GAATCTACCCCCAGAAAAAATCTTGTTGAGGTGGATGAATTTCCATTTGAAAAAAGCAGGGTACAAGAAGATTGTCACTAATTTCTCCTCTGATGTGAAGgtaattgagt--tcttaatttggtgaaa--agtaaa-tgtacttatattctatcatttgctttggacaactagaatcactgttcattcagtactatctcaatgca
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GAGTATGCCAGCTGAGAAAATCTTGCTTCGGTGGATGAATTTTCATTTGAGGAAAGCGGGCTACAAGAAGATCGTGTCGAATTTCACTTCTGATGTTAAGgtaacggtctggtcctggtctagcgagtctggtagtctggacttggcgataaattgatattgcacattgtttgtttctcatgtcttttactttttcttta-----
upper sequence: GLYMA16G09360.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S271_37V6.1 (Physcomitrella patens), 5'ss of exon 4
GAATCTACCCCCAGAAAAAATCTTGTTGAGGTGGATGAATTTCCATTTGAAAAAAGCAGGGTACAAGAAGATTGTCACTAATTTCTCCTCTGATGTGAAGgtaattgagttcttaatttggtgaaaagtaaatgtacttatattctatcatttgctttggacaactaga-atcactgttcattcagtac-tatctcaatgca-
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GAGCATGCCAGCTGAGAAAATCCTGCTGCGGTGGATGAATTTTCATTTGAAAAAAGCAGGCCATAAGAAGACCGTGTCAAATTTTACTACTGACGTAAAGgtaattg---tttggcttttatctatttgcggtggaattccggagcttgtgctaaattggaaaatcacatagcactgcttgttcattgtgtctcttactgttgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193319604|gb|FK285139.1|FK285139EST: AAAAAGCAGGGTACAAGAAGATTGTCACTAATTTCTCCTCTGATGTGAAG GATGCTGAGGCTTATGCACACCTTCTAAATGTTCTTGTCACCTGAACACAC
genomic: AAAAAGCAGGGTACAAGAAGATTGTCACTAATTTCTCCTCTGATGTGAAGgtaattgagt ... gacactgcagGATGCTGAGGCTTATGCACACCTTCTAAATGTTCTTG-CACCTGAACACAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAATCTACCCCCAGAAAAAATCTTGTTGAGGTGGATGAATTTCCATTTGAAAAAAGCAGGGTACAAGAAGATTGTCACTAATTTCTCCTCTGATGTGAAGgtaattgagttcttaatttggtgaaaagtaaatgtacttatattctatcatttgctttggacaactagaatcactgttcattcagtactatctcaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagtaa