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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTGgtatgggaagctctcttgaggaatattttacttctttcttacgttaataattgtttcttatttttcttttccgtatattttgcatgctgttgtgattcta...

Basic information

species Glycine max
transcript GLYMA16G07110.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G07110.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0219g00120.t01 (Vitis vinifera), 5'ss of exon 7
ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTGgtatgggaagctctct---tgaggaatattttact---tctttcttacgttaataattgtttcttatttttcttttccgtata--ttttgcatgctgttgtgattcta
|||| ||||| ||||||||||| |||||||||||  | |||||||||||||||||| |   ||  |   | |    ||||||| |   | || ||     |  ||| || | || |||  |   ||   | |    |||  |||| |           
ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTGgtatggaattttcattgccttacttttattttattatctattcctcttacttttaagtgctactcattgattggttgaatgttatctttttatgcggcca--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294741|gb|FG986590.1|FG986590
EST:     ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTG                         GTATCTGTATTCTTTGACATTATTTTCATTATTCAACATTATGTTCTGTAT
genomic: ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTGgtatgggaag ... acaactgcagGTATCTGTATTCTTTGACATTATTTTCATTATTCAACATTATGTTCTGTAT
EST: gi|254347046|gb|GR856716.1|GR856716
EST:     ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTG                         GTATCTGTATTCTTTGACATTATTTTCATTATTCAACATTATGTTCTGTAT
genomic: ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTGgtatgggaag ... acaactgcagGTATCTGTATTCTTTGACATTATTTTCATTATTCAACATTATGTTCTGTAT
EST: gi|192313595|gb|FK005591.1|FK005591
EST:     ATTCATGGGTCAACTTCTATGGGGATATAGGAAAAGTGTTGCTATCTTTG                         GTATCTGTATTCTTTGACATTATTTTCATTATTCAACATTATGTTCTGTAT
genomic: ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTGgtatgggaag ... acaactgcagGTATCTGTATTCTTTGACATTATTTTCATTATTCAACATTATGTTCTGTAT
EST: gi|254327243|gb|GR836852.1|GR836852
EST:     ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTG                         GTATCTGTATTCTTTGACATTATTTTCATTATTCAACATTATGTTCTGTAT
genomic: ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTGgtatgggaag ... acaactgcagGTATCTGTATTCTTTGACATTATTTTCATTATTCAACATTATGTTCTGTAT
EST: gi|192306920|gb|FG999953.1|FG999953
EST:     ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTG                         GTATCTGTATTCTTTGACATTATTTTCATTATTCAACATTATGTTCTGTAT
genomic: ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTGgtatgggaag ... acaactgcagGTATCTGTATTCTTTGACATTATTTTCATTATTCAACATTATGTTCTGTAT
EST: gi|254327242|gb|GR836851.1|GR836851
EST:     ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTG                         GTATCTGTATTCTTTGACATTATTTTCATTATTCAACATTATGTTCTGTAT
genomic: ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTGgtatgggaag ... acaactgcagGTATCTGTATTCTTTGACATTATTTTCATTATTCAACATTATGTTCTGTAT
EST: gi|151401800|gb|EV271613.1|EV271613
EST:     ATTCATGGGTCAACTTCTATGGGA-TATAGGAAAAGTGTTGCTATCTTTG                         GTATCTGTATTCTTTGACAT-ATTTTCATTATTCA-CATT
genomic: ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTGgtatgggaag ... acaactgcagGTATCTGTATTCTTTGACATTATTTTCATTATTCAACATT