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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAGgtgaggatttttaattgtcaaagttacaactttgggttaaaagttacttaaacttcatttattcaattgaaattagggaaggtattgttggttaagcttt...

Basic information

species Glycine max
transcript GLYMA16G06850.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G06850.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G130230_T03 (Zea mays), 5'ss of exon 7
TTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAGgtgaggatttttaattgtcaaagtta-caactttgggttaaaagttacttaaacttcatttattcaattgaaattagggaaggtattgttggttaagcttt-
 | || ||||| ||||| || || || |||||||| ||||||||||||||||| ||||| ||  ||||||| ||   ||||   | |   || || ||  |  |   |  |  || ||   |     | ||| ||  | |||||   |    | || |   | |||  |  
CTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAGgtaagatcttttgtatttggtagctagcagttgggaacttcattttgctggtataagctctatgcacat-aaattgcagtccct-ttatcattcaagaatgt

upper sequence: GLYMA16G06850.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G27300.1 (Arabidopsis thaliana), 5'ss of exon 7
TTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAGgtgaggatttttaattgtcaaagttacaactttgggttaaaagttacttaaacttcatttattcaattgaaattagggaaggtattgttggttaagcttt
||||| ||||| ||||| ||||| || || |||||||| |||||||||||||| ||||  ||||||||||||||  |||   || |   |    |||| | |   | ||   ||   || | || | |   || |   ||||     ||  | || |||          
TTGGTTCTTCGGTTTGCCAATCGCTTGTTTTTGCCACTATGGAACCGCGACAATATTGCAAACGTACAGgtgagagttt--gatcgcttag--cacaaatatttctaaacttttgtatagagttgaatccatccacataaatctct-aatttctttttgcag-------

upper sequence: GLYMA16G06850.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G40760.1 (Arabidopsis thaliana), 5'ss of exon 7
TTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAGgtgaggatttttaattgtcaaagttacaact-ttgggttaaaagttacttaaacttcattta----ttcaattgaaattagggaaggtattgttggttaagcttt
||||| || || ||||||||||| ||||||||||||||||||||||| ||||| || || ||||| ||||||||   |    || |  ||      ||   |  |  |    |||| ||| | |  ||| |    ||||| ||   ||   | ||                   
TTGGTCCTCCGGTTTGCAAATCGCTTTTTCTTGCCACTTTGGAACCGTGACAATATCGAGAACGTGCAGgtgagagctgc--atagctaagacagaaatagtcagactgtttgttatttagagtcaattcacattttcaaatgcttttcttgcag-------------------

upper sequence: GLYMA16G06850.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0171g00490.t01 (Vitis vinifera), 5'ss of exon 7
TTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAGgtgaggatttttaattgtcaaagttacaactttgggtta-----aaagtta---cttaaacttcatttattcaattgaaattagggaaggtattgttggttaagcttt
||||||||||| |||||||||||  | || ||||| || |||||||| ||||||||||| || |||||||| || |||  | ||| |     ||||  ||     |||     |  || |   | | ||  | | ||||| | |  ||  |   |  |||||  |    |       
TTGGTACTTCGTTTTGCAAATCGCATGTTTTTGCCCCTCTGGAACCGTGACAACATTGATAATGTACAGgttag-attccttattttggtgattacctctgaaacttatttacagggtgagaccatgaaagtaaattattaactataagatttaggtggtatcctcaagt-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15815763|gb|BI788038.1|BI788038
EST:     TGACAACGTACAG                         ATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
genomic: TGACAACGTACAGgtgaggattt ... tctatgacagATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
EST: gi|16278453|gb|BI942912.1|BI942912
EST:     ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAG                         ATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
genomic: ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAGgtgaggattt ... tctatgacagATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
EST: gi|192310375|gb|FK002255.1|FK002255
EST:     ATCGGTTTTTCTTACCACTTTGGAACCGCGACAACATTGACAACGTACAG                         ATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
genomic: ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAGgtgaggattt ... tctatgacagATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
EST: gi|254331186|gb|GR843305.1|GR843305
EST:     ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAG                         ATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
genomic: ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAGgtgaggattt ... tctatgacagATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
EST: gi|37995859|gb|CF807448.1|CF807448
EST:     ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAG                         ATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
genomic: ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAGgtgaggattt ... tctatgacagATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
EST: gi|16348742|gb|BI974337.1|BI974337
EST:     ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAG                         ATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
genomic: ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAGgtgaggattt ... tctatgacagATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
EST: gi|17519559|gb|BM188601.1|BM188601
EST:     ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAG                         ATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
genomic: ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAGgtgaggattt ... tctatgacagATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC