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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACAAGGATTGCACTTTCGGAGGGATATGGAATGGTGGTGGGGGAGCTGGAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattattttattttatttaatttcggctatggttttagtctcttaataaatttaagtcacttttgatttattaaaaatttatttattttagtccct...

Basic information

species Glycine max
transcript GLYMA16G04770.4
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31308066|gb|CD393269.1|CD393269
EST:     ACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG                         GCTGGTTTTGTTGATCCTTACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
genomic: ACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: gi|31465540|gb|CD407568.1|CD407568
EST:     GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG                         GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: gi|209718019|gb|BW671850.1|BW671850
EST:     GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG                         GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: gi|16345490|gb|BI971085.1|BI971085
EST:     GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG                         GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: gi|31472483|gb|CD414511.1|CD414511
EST:     GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG                         GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: gi|23063614|gb|BU578587.1|BU578587
EST:     GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG                         GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: gi|31459452|gb|CD401480.1|CD401480
EST:     GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG                         GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: gi|31470653|gb|CD412681.1|CD412681
EST:     GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTCGCCGATGAG                         GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: gi|31463475|gb|CD405503.1|CD405503
EST:     GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG                         GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: gi|31457448|gb|CD399476.1|CD399476
EST:     GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG                         GCTGGTTTTGTTGATCCTAACGCCCCCAATGCCCAAGTTCGTCCTGTGGAT
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: gi|31307120|gb|CD392323.1|CD392323
EST:     CTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG                         GCTGGTTTTGTTGATCCAAACGCCTCCTATGCCAAAGTTCGTCCTGTGGAT
genomic: CTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: gi|31467978|gb|CD410006.1|CD410006
EST:     GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG                         GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: gi|31473162|gb|CD415190.1|CD415190
EST:     GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG                         GCTGGTTTTGTTGATCCNAACGCCCCCAATGCCNAAGTTCGTCCTGTGGAT
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: gi|14258524|gb|BG881432.1|BG881432
EST:     GACAAA-CAACTTTTTTATTGCCTCATTNTTCTTAGAAGTTGCCGATGAG                         GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCG
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCG
EST: gi|209721792|gb|BW666399.1|BW666399
EST:     GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG                         GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: gi|31473169|gb|CD415197.1|CD415197
EST:     GAGAAAACGACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG                         GCTGGTTTTGTTGATCCCAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: gi|22524763|gb|BU083574.1|BU083574
EST:     GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG                         GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTACAAGGATTGCACTTTCGGAGGGATATGGAATGGTGGTGGGGGAGCTGGAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattattttattttatttaatttcggctatggttttagtctcttaataaatttaagtcacttttgatttattaaaaatttatttattttagtccct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG